Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   AT683_RS01560 Genome accession   NZ_LN831035
Coordinates   315589..316824 (-) Length   411 a.a.
NCBI ID   WP_005658618.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC8143     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 310589..321824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT683_RS01525 (ERS450003_00301) - 311084..311704 (-) 621 WP_011272188.1 YigZ family protein -
  AT683_RS01530 (ERS450003_00302) tusA 311820..312059 (+) 240 WP_005665561.1 sulfurtransferase TusA -
  AT683_RS01535 (ERS450003_00303) htpX 312101..312955 (-) 855 WP_162837812.1 protease HtpX -
  AT683_RS01540 (ERS450003_00304) - 313120..313509 (-) 390 WP_005630808.1 RidA family protein -
  AT683_RS01545 (ERS450003_00305) - 313566..314318 (-) 753 WP_005648600.1 VacJ family lipoprotein -
  AT683_RS01550 (ERS450003_00306) nusG 314469..315026 (-) 558 WP_005648601.1 transcription termination/antitermination protein NusG -
  AT683_RS01555 (ERS450003_00307) secE 315028..315444 (-) 417 WP_005658616.1 preprotein translocase subunit SecE -
  AT683_RS01560 (ERS450003_00308) clpX 315589..316824 (-) 1236 WP_005658618.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  AT683_RS01565 (ERS450003_00309) clpP 316834..317445 (-) 612 WP_257003823.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  AT683_RS01570 (ERS450003_00310) tig 317538..318836 (-) 1299 WP_006995277.1 trigger factor -
  AT683_RS09800 - 319138..319269 (+) 132 Protein_297 PT domain-containing protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45610.20 Da        Isoelectric Point: 4.7350

>NTDB_id=991585 AT683_RS01560 WP_005658618.1 315589..316824(-) (clpX) [Haemophilus influenzae strain NCTC8143]
MTDKDKDLHCSFCGKEKGEVDKLIAGTGGYICNECIELCHSMLEESNDENLEESAVENKDKLPTPHEIRAHLDDYVIGQD
YAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVL
QKLLQNCEYDTEKAEKGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMVKLDTSK
ILFICGGAFAGLDKIIDKRTQTSTSIGFNAKVEKDEKQQSLSELFRQVEPDDLMKFGLIPEFIGRLPMIAPLSELDEDAL
IQILTKPKNALIKQYQALFGLEKVELDFTPEALKAMAKKALERKTGARGLRSIVEAVLLDTMYDLPSLENLQKVIVDEST
IVDNLAPKLEY

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=991585 AT683_RS01560 WP_005658618.1 315589..316824(-) (clpX) [Haemophilus influenzae strain NCTC8143]
ATGACAGACAAAGATAAAGATTTGCACTGCTCTTTTTGCGGAAAAGAAAAAGGCGAAGTAGATAAATTAATTGCTGGCAC
AGGCGGTTATATTTGTAATGAATGTATTGAACTTTGTCACTCAATGCTTGAAGAAAGTAATGATGAAAACCTAGAGGAAA
GTGCGGTCGAAAATAAAGATAAATTGCCAACGCCTCACGAAATTCGCGCCCATCTGGATGATTATGTTATTGGTCAAGAT
TATGCGAAAAAAGTGCTTTCTGTGGCAGTTTATAATCATTATAAACGCTTGCGAACTAACTATGAAAGCAATGATGTAGA
GCTTGGCAAAAGTAATATTTTACTTATAGGCCCTACAGGTAGCGGAAAAACGTTACTTGCGCAAACATTAGCTCGTCGTT
TAAATGTACCCTTTGCGATGGCAGATGCAACCACATTAACGGAAGCTGGTTATGTGGGAGAAGATGTAGAGAATGTATTA
CAGAAACTTTTGCAAAATTGTGAATACGATACTGAAAAAGCAGAGAAAGGCATTATTTATATTGATGAAATTGATAAAAT
TAGCCGTAAATCGGAAGGCGCATCAATTACTCGAGATGTTTCAGGAGAGGGGGTGCAACAGGCTTTATTAAAACTTATTG
AAGGTACAATAGCTTCCATTCCACCTCAAGGCGGTCGTAAACATCCACAACAAGAAATGGTAAAATTGGATACGTCTAAA
ATTCTCTTTATTTGCGGCGGTGCATTTGCAGGATTAGATAAAATTATTGATAAACGCACTCAAACCAGTACGAGTATTGG
TTTTAATGCCAAAGTTGAAAAAGATGAAAAACAACAATCTCTTTCTGAATTATTCCGTCAAGTTGAACCTGATGATTTGA
TGAAATTTGGTTTAATTCCAGAATTTATCGGACGCTTGCCAATGATTGCCCCATTAAGTGAATTAGACGAAGATGCGCTG
ATACAAATTCTCACAAAACCAAAAAACGCATTAATTAAACAATATCAAGCCTTATTTGGATTGGAAAAAGTAGAATTGGA
TTTCACACCAGAAGCATTAAAAGCAATGGCGAAAAAAGCACTTGAAAGAAAAACGGGTGCGCGTGGCTTACGTTCTATCG
TAGAAGCAGTGTTGTTAGATACAATGTATGATCTACCGTCTCTTGAGAATTTACAAAAAGTTATCGTTGATGAATCGACA
ATTGTAGATAATCTTGCGCCAAAATTAGAATATTAG

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(110-309)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(315-392)

ClpX C4-type zinc finger (zf-C4_ClpX)

(8-45)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

57.843

99.27

0.574
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.138

97.08

0.535

Multiple sequence alignment