Detailed information NTG0991585

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAHZ45_RS21170
• Genome accession: NZ_CP153674
• Coordinates: 4305078..4305878 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain Kpn5841
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4300078..4310878

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHZ45_RS21135 (AAHZ45_21085)	gspH	4300234..4300749 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
AAHZ45_RS21140 (AAHZ45_21090)	gspI	4300746..4301111 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
AAHZ45_RS21145 (AAHZ45_21095)	gspJ	4301108..4301704 (+)	597	WP_023279845.1	type II secretion system minor pseudopilin GspJ	-
AAHZ45_RS21150 (AAHZ45_21100)	gspK	4301701..4302687 (+)	987	WP_004177385.1	type II secretion system minor pseudopilin GspK	-
AAHZ45_RS21155 (AAHZ45_21105)	gspL	4302674..4303867 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
AAHZ45_RS21160 (AAHZ45_21110)	-	4303860..4304345 (+)	486	WP_004183037.1	type II secretion system protein M	-
AAHZ45_RS21165 (AAHZ45_21115)	-	4304335..4305081 (+)	747	WP_373855970.1	type II secretion system protein N	-
AAHZ45_RS21170 (AAHZ45_21120)	pilD	4305078..4305878 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
AAHZ45_RS21175 (AAHZ45_21125)	hrpB	4305926..4308355 (-)	2430	WP_032437605.1	ATP-dependent helicase HrpB	-
AAHZ45_RS21180 (AAHZ45_21130)	thpR	4308428..4308964 (+)	537	WP_196528862.1	RNA 2',3'-cyclic phosphodiesterase	-
AAHZ45_RS21185 (AAHZ45_21135)	sfsA	4308964..4309680 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
AAHZ45_RS21190 (AAHZ45_21140)	dksA	4309843..4310298 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=991585 AAHZ45_RS21170 WP_004145898.1 4305078..4305878(+) (pilD) [Klebsiella pneumoniae strain Kpn5841]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=991585 AAHZ45_RS21170 WP_004145898.1 4305078..4305878(+) (pilD) [Klebsiella pneumoniae strain Kpn5841]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425