Detailed information NTG0991561

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAHZ12_RS21500
• Genome accession: NZ_CP153670
• Coordinates: 4334632..4335432 (+)
• Length: 266 a.a.
• NCBI ID: WP_004191960.1
• Uniprot ID: A0AAJ5B1F9
• Organism: Klebsiella pneumoniae strain Kpn394
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4329632..4340432

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHZ12_RS21465 (AAHZ12_21405)	gspH	4329788..4330303 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
AAHZ12_RS21470 (AAHZ12_21410)	gspI	4330300..4330665 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
AAHZ12_RS21475 (AAHZ12_21415)	gspJ	4330662..4331258 (+)	597	WP_004145893.1	type II secretion system minor pseudopilin GspJ	-
AAHZ12_RS21480 (AAHZ12_21420)	gspK	4331255..4332241 (+)	987	WP_021467522.1	type II secretion system minor pseudopilin GspK	-
AAHZ12_RS21485 (AAHZ12_21425)	gspL	4332228..4333421 (+)	1194	WP_040224338.1	type II secretion system protein GspL	-
AAHZ12_RS21490 (AAHZ12_21430)	-	4333414..4333899 (+)	486	WP_004151943.1	type II secretion system protein M	-
AAHZ12_RS21495 (AAHZ12_21435)	-	4333889..4334635 (+)	747	WP_004145897.1	type II secretion system protein N	-
AAHZ12_RS21500 (AAHZ12_21440)	pilD	4334632..4335432 (+)	801	WP_004191960.1	A24 family peptidase	Machinery gene
AAHZ12_RS21505 (AAHZ12_21445)	hrpB	4335480..4337909 (-)	2430	WP_042939508.1	ATP-dependent helicase HrpB	-
AAHZ12_RS21510 (AAHZ12_21450)	thpR	4337982..4338518 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
AAHZ12_RS21515 (AAHZ12_21455)	sfsA	4338518..4339234 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
AAHZ12_RS21520 (AAHZ12_21460)	dksA	4339397..4339852 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29403.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=991561 AAHZ12_RS21500 WP_004191960.1 4334632..4335432(+) (pilD) [Klebsiella pneumoniae strain Kpn394]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMI

Nucleotide

• Length: 801 bp

>NTDB_id=991561 AAHZ12_RS21500 WP_004191960.1 4334632..4335432(+) (pilD) [Klebsiella pneumoniae strain Kpn394]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGTATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCAGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACTCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGATCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421