Detailed information NTG0991443

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAH456_RS22095
• Genome accession: NZ_CP153654
• Coordinates: 4447170..4447970 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain Kpn2411
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4442170..4452970

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAH456_RS22060 (AAH456_22000)	gspH	4442326..4442841 (+)	516	WP_032422016.1	type II secretion system minor pseudopilin GspH	-
AAH456_RS22065 (AAH456_22005)	gspI	4442838..4443203 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
AAH456_RS22070 (AAH456_22010)	gspJ	4443200..4443796 (+)	597	WP_032422017.1	type II secretion system minor pseudopilin GspJ	-
AAH456_RS22075 (AAH456_22015)	gspK	4443793..4444779 (+)	987	WP_004213439.1	type II secretion system minor pseudopilin GspK	-
AAH456_RS22080 (AAH456_22020)	gspL	4444766..4445959 (+)	1194	WP_130976524.1	type II secretion system protein GspL	-
AAH456_RS22085 (AAH456_22025)	-	4445952..4446437 (+)	486	WP_004145896.1	type II secretion system protein M	-
AAH456_RS22090 (AAH456_22030)	-	4446427..4447173 (+)	747	WP_023282189.1	type II secretion system protein N	-
AAH456_RS22095 (AAH456_22035)	pilD	4447170..4447970 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
AAH456_RS22100 (AAH456_22040)	hrpB	4448018..4450447 (-)	2430	WP_101987993.1	ATP-dependent helicase HrpB	-
AAH456_RS22105 (AAH456_22045)	thpR	4450520..4451056 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
AAH456_RS22110 (AAH456_22050)	sfsA	4451056..4451772 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
AAH456_RS22115 (AAH456_22055)	dksA	4451935..4452390 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=991443 AAH456_RS22095 WP_004145898.1 4447170..4447970(+) (pilD) [Klebsiella pneumoniae strain Kpn2411]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=991443 AAH456_RS22095 WP_004145898.1 4447170..4447970(+) (pilD) [Klebsiella pneumoniae strain Kpn2411]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTATTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425