Detailed information NTG0991324

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAH452_RS20645
• Genome accession: NZ_CP153636
• Coordinates: 4191376..4192176 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain Kpn4717
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4186376..4197176

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAH452_RS20610 (AAH452_20560)	gspH	4186532..4187047 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
AAH452_RS20615 (AAH452_20565)	gspI	4187044..4187409 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
AAH452_RS20620 (AAH452_20570)	gspJ	4187406..4188002 (+)	597	WP_038807639.1	type II secretion system minor pseudopilin GspJ	-
AAH452_RS20625 (AAH452_20575)	gspK	4187999..4188985 (+)	987	WP_077258272.1	type II secretion system minor pseudopilin GspK	-
AAH452_RS20630 (AAH452_20580)	gspL	4188972..4190165 (+)	1194	WP_048255484.1	type II secretion system protein GspL	-
AAH452_RS20635 (AAH452_20585)	-	4190158..4190643 (+)	486	WP_004151943.1	type II secretion system protein M	-
AAH452_RS20640 (AAH452_20590)	-	4190633..4191379 (+)	747	WP_009309263.1	type II secretion system protein N	-
AAH452_RS20645 (AAH452_20595)	pilD	4191376..4192176 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
AAH452_RS20650 (AAH452_20600)	hrpB	4192224..4194653 (-)	2430	WP_048255483.1	ATP-dependent helicase HrpB	-
AAH452_RS20655 (AAH452_20605)	thpR	4194726..4195262 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
AAH452_RS20660 (AAH452_20610)	sfsA	4195262..4195978 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
AAH452_RS20665 (AAH452_20615)	dksA	4196141..4196596 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=991324 AAH452_RS20645 WP_004145898.1 4191376..4192176(+) (pilD) [Klebsiella pneumoniae strain Kpn4717]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=991324 AAH452_RS20645 WP_004145898.1 4191376..4192176(+) (pilD) [Klebsiella pneumoniae strain Kpn4717]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425