Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SP4011_RS09175 Genome accession   NZ_AP026968
Coordinates   1812346..1813077 (-) Length   243 a.a.
NCBI ID   WP_016399210.1    Uniprot ID   -
Organism   Streptococcus parapneumoniae strain SP4011     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1807346..1818077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP4011_RS09155 - 1808512..1809861 (-) 1350 WP_338618936.1 sensor histidine kinase -
  SP4011_RS09160 (SP4011_17690) comE/blpR 1809875..1810612 (-) 738 WP_338618937.1 response regulator transcription factor Regulator
  SP4011_RS09165 (SP4011_17700) - 1810908..1811237 (+) 330 WP_000132586.1 hypothetical protein -
  SP4011_RS09170 (SP4011_17710) - 1811300..1812349 (-) 1050 WP_016399209.1 ABC transporter permease -
  SP4011_RS09175 (SP4011_17720) pptA 1812346..1813077 (-) 732 WP_016399210.1 ABC transporter ATP-binding protein Regulator
  SP4011_RS09180 (SP4011_17730) - 1813145..1813555 (+) 411 WP_057487502.1 HIT family protein -
  SP4011_RS09185 (SP4011_17740) - 1813565..1813852 (+) 288 WP_000777754.1 hypothetical protein -
  SP4011_RS09190 (SP4011_17750) dnaJ 1814131..1815270 (-) 1140 WP_050275809.1 molecular chaperone DnaJ -
  SP4011_RS09195 (SP4011_17760) - 1815600..1816001 (-) 402 WP_338618940.1 tRNA (guanine-N7)-methyltransferase -
  SP4011_RS09200 (SP4011_17770) dnaK 1816003..1817826 (-) 1824 WP_338618941.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27097.55 Da        Isoelectric Point: 4.6926

>NTDB_id=99132 SP4011_RS09175 WP_016399210.1 1812346..1813077(-) (pptA) [Streptococcus parapneumoniae strain SP4011]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLTPYSGSININGLTLQEDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQNVAFDRVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAIADLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFNMPEASLNDIYLALTKE
EEL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=99132 SP4011_RS09175 WP_016399210.1 1812346..1813077(-) (pptA) [Streptococcus parapneumoniae strain SP4011]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTCCATGTCCCTGTCTTGAAAGATGTGTCCTTTACCGTTGAAAGTGG
ACAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGCCTGTTGACACCTT
ATAGTGGCTCCATCAATATCAATGGCTTGACCCTGCAAGAAGATGCGACTAGCTACCGCAAGCAAATTGGCTACATTCCT
GAGACACCTAGCTTGTATGAGGAATTGACTCTCAGAGAGCATATCGAAACGGTTGCCATGGCCTATGGTATTGAGCAAAA
TGTAGCTTTTGATCGAGTAGAACCTTTGTTAAAAATGTTCCGTCTGGAGCAGAAGTTAGATTGGTTTCCTGTTCATTTTT
CCAAAGGGATGAAGCAGAAGGTTATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTCTTTATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTGCGGACTTGATCCAACTTTTGGAAGTGGAAAAGCAAAAGGGTAAGTCCATTCTCAT
GAGTACCCACGTGTTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCTAAGG
GAAATCTCCTACAACTGCGCGAAGCCTTTAACATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGAGCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment