Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SP4011_RS06995 Genome accession   NZ_AP026968
Coordinates   1345379..1347181 (-) Length   600 a.a.
NCBI ID   WP_338618478.1    Uniprot ID   -
Organism   Streptococcus parapneumoniae strain SP4011     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1340379..1352181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP4011_RS06965 (SP4011_13350) - 1340952..1341794 (+) 843 WP_338618469.1 DUF368 domain-containing protein -
  SP4011_RS06970 (SP4011_13360) - 1341794..1342276 (+) 483 WP_338618471.1 aminoacyl-tRNA deacylase -
  SP4011_RS06975 (SP4011_13370) - 1342276..1342896 (+) 621 WP_338618472.1 histidine phosphatase family protein -
  SP4011_RS06980 - 1343254..1343349 (-) 96 Protein_1330 IS630 family transposase -
  SP4011_RS06985 (SP4011_13380) prsA 1343656..1344597 (-) 942 WP_338618474.1 peptidylprolyl isomerase PrsA -
  SP4011_RS06990 (SP4011_13390) - 1344664..1345377 (-) 714 WP_338618476.1 O-methyltransferase -
  SP4011_RS06995 (SP4011_13400) pepF 1345379..1347181 (-) 1803 WP_338618478.1 oligoendopeptidase F Regulator
  SP4011_RS07000 (SP4011_13410) coiA 1347200..1348153 (-) 954 WP_338618480.1 competence protein CoiA Machinery gene
  SP4011_RS07005 (SP4011_13420) tehB 1348226..1349086 (-) 861 WP_338618481.1 SAM-dependent methyltransferase TehB -
  SP4011_RS07010 (SP4011_13430) smpB 1349102..1349569 (-) 468 WP_001051750.1 SsrA-binding protein SmpB -
  SP4011_RS07015 (SP4011_13440) rnr 1349532..1351886 (-) 2355 WP_338618486.1 ribonuclease R -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69853.75 Da        Isoelectric Point: 4.5649

>NTDB_id=99120 SP4011_RS06995 WP_338618478.1 1345379..1347181(-) (pepF) [Streptococcus parapneumoniae strain SP4011]
MVLQRHEINEKDTWDLSTIYPTDQAWEEALKDLTEQLETVAQYEGHLLNSADSLLEITEFSLEMERQMEKLYVYAHMKND
QDTREAKYQEYYAKAMTLYSQLDQAFSFYEPEFMDISEKQYADFLEAQPKLQVYQHYFDKLLQSKDHVLSQREEELLAGA
GEIFGSASETFAILDNADIVFPYVLDDDGKEVQLSHGIYTRLMESKNREVRRGAYQALYATYEQFQHTYAKTLQTNVKVQ
NYRAKVRNYKSARHAALAANFVAESVYDNLVAAVRKHLPLLHRYLELRSKILGISDLKMYDVYTPLSSVEYSFTYQEALK
KAEDALSVLGEDYLSRVKRAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDNLDSLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNNFLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSDF
LNKLYADLNQEYYGLSKEDNPEIQYEWARIPHFYYNYYVYQYSTGFAAASALAEKIVHGSQEDRDRYIDYLKAGKSDYPL
NVMRKAGVDMEKEDYLNDAFAVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=99120 SP4011_RS06995 WP_338618478.1 1345379..1347181(-) (pepF) [Streptococcus parapneumoniae strain SP4011]
ATGGTATTACAAAGACATGAAATAAATGAAAAAGATACATGGGATCTATCAACGATCTACCCAACTGACCAGGCTTGGGA
AGAAGCCTTAAAAGATTTAACAGAACAATTGGAGACAGTAGCCCAGTATGAAGGCCATCTCTTGAATAGTGCGGATAGCC
TACTCGAAATTACTGAATTTTCTCTTGAAATGGAACGCCAAATGGAGAAGCTTTACGTTTATGCTCATATGAAGAATGAC
CAAGACACACGTGAAGCCAAGTACCAAGAGTACTATGCCAAGGCCATGACTCTCTACAGTCAGCTAGACCAAGCCTTTTC
ATTCTATGAGCCTGAATTTATGGATATTAGCGAAAAGCAGTATGCTGACTTTTTAGAGGCTCAACCAAAGCTGCAGGTTT
ATCAACACTATTTTGACAAGCTCTTGCAAAGCAAGGATCACGTTCTATCACAACGCGAAGAAGAATTATTGGCTGGAGCT
GGAGAAATCTTTGGTTCGGCAAGTGAAACCTTCGCTATCTTGGATAATGCGGATATTGTTTTTCCTTATGTTCTTGACGA
TGATGGTAAGGAAGTTCAGCTCTCTCATGGTATTTACACACGTTTGATGGAGTCTAAAAATCGTGAGGTTCGCCGTGGTG
CCTATCAAGCCCTTTATGCGACTTATGAGCAATTCCAACACACTTATGCCAAAACCTTGCAAACCAATGTTAAGGTTCAA
AACTATCGTGCCAAAGTTCGCAACTACAAGAGTGCTCGTCATGCAGCTCTAGCGGCGAATTTTGTTGCAGAGAGTGTTTA
TGACAATTTGGTAGCAGCAGTTCGCAAGCATTTGCCACTCTTGCATCGTTACCTTGAGCTTCGTTCAAAGATTTTGGGGA
TTTCAGACCTCAAGATGTACGATGTCTATACACCACTTTCATCTGTTGAATACAGTTTTACCTACCAAGAAGCCTTGAAA
AAGGCAGAAGATGCTTTGTCAGTCTTGGGTGAGGATTACTTGAGCCGTGTTAAACGTGCCTTCAGCGAGCGTTGGATTGA
TGTTTACGAAAATCAAGGCAAGCGTTCAGGGGCTTACTCTGGTGGTTCTTACGATACCAATGCCTTTATGCTCCTTAACT
GGCAGGACAATCTTGACAGTCTCTTTACTCTTGTTCATGAGACAGGCCACAGCATGCATTCTAGCTATACTCGCGAGACT
CAGCCTTATGTTTATGGAGATTACTCTATCTTCTTGGCTGAGATTGCATCAACTACCAATGAAAATATCTTGACGGAGAA
ATTATTGGAAGAAGTGGAAGACGACGCAACGCGCTTTGCTATTCTCAATAACTTCCTAGATGGTTTCCGTGGAACAGTTT
TCCGCCAAACTCAATTTGCCGAGTTTGAACACGCCATTCACCAAGCAGACCAAAATGGGGAAGTTTTGACAAGCGATTTC
CTAAATAAACTCTACGCAGACTTGAACCAAGAGTATTATGGTTTGAGTAAGGAAGACAATCCTGAAATCCAATACGAGTG
GGCACGCATTCCACACTTCTACTATAACTACTATGTGTATCAATATTCAACTGGATTTGCAGCAGCCTCAGCCCTGGCTG
AAAAGATTGTCCATGGTAGTCAAGAAGACCGTGACCGCTATATCGATTATCTCAAGGCAGGTAAATCTGACTACCCACTC
AATGTCATGAGAAAAGCTGGTGTTGATATGGAGAAGGAAGACTACCTCAACGATGCCTTTGCAGTCTTTGAACGCCGTTT
AAATGAGTTTGAAGCCCTTGTTGAAAAATTGGGATTGGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

66.611

99.333

0.662

Multiple sequence alignment