Detailed information NTG0991181

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAH440_RS21595
• Genome accession: NZ_CP153624
• Coordinates: 4328581..4329381 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain Kpn301
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4323581..4334381

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAH440_RS21560 (AAH440_21510)	gspH	4323737..4324252 (+)	516	WP_029602499.1	type II secretion system minor pseudopilin GspH	-
AAH440_RS21565 (AAH440_21515)	gspI	4324249..4324614 (+)	366	WP_029602500.1	type II secretion system minor pseudopilin GspI	-
AAH440_RS21570 (AAH440_21520)	gspJ	4324611..4325207 (+)	597	WP_012737414.1	type II secretion system minor pseudopilin GspJ	-
AAH440_RS21575 (AAH440_21525)	gspK	4325204..4326190 (+)	987	WP_004178610.1	type II secretion system minor pseudopilin GspK	-
AAH440_RS21580 (AAH440_21530)	gspL	4326177..4327370 (+)	1194	WP_029602501.1	type II secretion system protein GspL	-
AAH440_RS21585 (AAH440_21535)	-	4327363..4327848 (+)	486	WP_004145896.1	type II secretion system protein M	-
AAH440_RS21590 (AAH440_21540)	-	4327838..4328584 (+)	747	WP_023316460.1	type II secretion system protein N	-
AAH440_RS21595 (AAH440_21545)	pilD	4328581..4329381 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
AAH440_RS21600 (AAH440_21550)	hrpB	4329429..4331858 (-)	2430	WP_029602503.1	ATP-dependent helicase HrpB	-
AAH440_RS21605 (AAH440_21555)	thpR	4331931..4332467 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
AAH440_RS21610 (AAH440_21560)	sfsA	4332467..4333183 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
AAH440_RS21615 (AAH440_21565)	dksA	4333346..4333801 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=991181 AAH440_RS21595 WP_004145898.1 4328581..4329381(+) (pilD) [Klebsiella pneumoniae strain Kpn301]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=991181 AAH440_RS21595 WP_004145898.1 4328581..4329381(+) (pilD) [Klebsiella pneumoniae strain Kpn301]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425