Detailed information NTG0991157

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAH429_RS20755
• Genome accession: NZ_CP153622
• Coordinates: 4236827..4237627 (+)
• Length: 266 a.a.
• NCBI ID: WP_102013110.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain Kpn116
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4231827..4242627

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAH429_RS20720 (AAH429_20695)	gspH	4231983..4232492 (+)	510	WP_102012851.1	type II secretion system minor pseudopilin GspH	-
AAH429_RS20725 (AAH429_20700)	gspI	4232495..4232860 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
AAH429_RS20730 (AAH429_20705)	gspJ	4232857..4233453 (+)	597	WP_004145893.1	type II secretion system minor pseudopilin GspJ	-
AAH429_RS20735 (AAH429_20710)	gspK	4233450..4234436 (+)	987	WP_004178610.1	type II secretion system minor pseudopilin GspK	-
AAH429_RS20740 (AAH429_20715)	gspL	4234423..4235616 (+)	1194	WP_048265188.1	type II secretion system protein GspL	-
AAH429_RS20745 (AAH429_20720)	-	4235609..4236094 (+)	486	WP_004151943.1	type II secretion system protein M	-
AAH429_RS20750 (AAH429_20725)	-	4236084..4236830 (+)	747	WP_004145897.1	type II secretion system protein N	-
AAH429_RS20755 (AAH429_20730)	pilD	4236827..4237627 (+)	801	WP_102013110.1	A24 family peptidase	Machinery gene
AAH429_RS20760 (AAH429_20735)	hrpB	4237675..4240104 (-)	2430	WP_038806673.1	ATP-dependent helicase HrpB	-
AAH429_RS20765 (AAH429_20740)	thpR	4240177..4240713 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
AAH429_RS20770 (AAH429_20745)	sfsA	4240713..4241429 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
AAH429_RS20775 (AAH429_20750)	dksA	4241592..4242047 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29374.98 Da
• Isoelectric Point: 8.8894

>NTDB_id=991157 AAH429_RS20755 WP_102013110.1 4236827..4237627(+) (pilD) [Klebsiella pneumoniae strain Kpn116]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVVLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=991157 AAH429_RS20755 WP_102013110.1 4236827..4237627(+) (pilD) [Klebsiella pneumoniae strain Kpn116]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGGTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (123-231)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	45.627	98.872	0.451
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	42.912	98.12	0.421