Detailed information NTG0991134

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAH426_RS21020
• Genome accession: NZ_CP153618
• Coordinates: 4302338..4303138 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain Kpn3403
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4297338..4308138

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAH426_RS20985 (AAH426_20945)	gspH	4297494..4298009 (+)	516	WP_004183045.1	type II secretion system minor pseudopilin GspH	-
AAH426_RS20990 (AAH426_20950)	gspI	4298006..4298371 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
AAH426_RS20995 (AAH426_20955)	gspJ	4298368..4298964 (+)	597	WP_117119834.1	type II secretion system minor pseudopilin GspJ	-
AAH426_RS21000 (AAH426_20960)	gspK	4298961..4299947 (+)	987	WP_004177385.1	type II secretion system minor pseudopilin GspK	-
AAH426_RS21005 (AAH426_20965)	gspL	4299934..4301127 (+)	1194	WP_025985182.1	type II secretion system protein GspL	-
AAH426_RS21010 (AAH426_20970)	-	4301120..4301605 (+)	486	WP_004145896.1	type II secretion system protein M	-
AAH426_RS21015 (AAH426_20975)	-	4301595..4302341 (+)	747	WP_004145897.1	type II secretion system protein N	-
AAH426_RS21020 (AAH426_20980)	pilD	4302338..4303138 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
AAH426_RS21025 (AAH426_20985)	hrpB	4303186..4305615 (-)	2430	WP_373856190.1	ATP-dependent helicase HrpB	-
AAH426_RS21030 (AAH426_20990)	thpR	4305688..4306224 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
AAH426_RS21035 (AAH426_20995)	sfsA	4306224..4306940 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
AAH426_RS21040 (AAH426_21000)	dksA	4307103..4307558 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=991134 AAH426_RS21020 WP_004145898.1 4302338..4303138(+) (pilD) [Klebsiella pneumoniae strain Kpn3403]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=991134 AAH426_RS21020 WP_004145898.1 4302338..4303138(+) (pilD) [Klebsiella pneumoniae strain Kpn3403]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425