Detailed information NTG0991127

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: VV34_RS15420
• Genome accession: NZ_LN649259
• Coordinates: 2902790..2904052 (-)
• Length: 420 a.a.
• NCBI ID: WP_003229613.1
• Uniprot ID: A0ABU0V489
• Organism: Bacillus subtilis strain BS49
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2897790..2909052

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VV34_RS15405 (BS49_30760)	yihA	2897891..2898478 (-)	588	WP_003229621.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
VV34_RS15410 (BS49_30770)	lon	2898475..2900799 (-)	2325	WP_003229618.1	endopeptidase La	-
VV34_RS15415 (BS49_30780)	lonB	2900980..2902638 (-)	1659	WP_004398923.1	ATP-dependent protease LonB	-
VV34_RS15420 (BS49_30790)	clpX	2902790..2904052 (-)	1263	WP_003229613.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
VV34_RS15425 (BS49_30800)	tig	2904324..2905598 (-)	1275	WP_003229611.1	trigger factor	-
VV34_RS15430 (BS49_30810)	ddcA	2905826..2906830 (-)	1005	WP_003229609.1	DNA damage checkpoint antagonist DdcA	-
VV34_RS15435 (BS49_30820)	leuD	2906949..2907548 (-)	600	WP_003229606.1	3-isopropylmalate dehydratase small subunit	-
VV34_RS15440 (BS49_30830)	leuC	2907561..2908979 (-)	1419	WP_003229604.1	3-isopropylmalate dehydratase large subunit	-

Sequence

Protein

• Length: 420 a.a.
• Molecular weight: 46350.22 Da
• Isoelectric Point: 4.5879

>NTDB_id=991127 VV34_RS15420 WP_003229613.1 2902790..2904052(-) (clpX) [Bacillus subtilis strain BS49]
MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVPKPQEIREILNEYVIGQDQ
AKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILL
KLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI
LFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAIL
TKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHG
EPPRLLLKDGTEVSQDKTSA

Nucleotide

• Length: 1263 bp

>NTDB_id=991127 VV34_RS15420 WP_003229613.1 2902790..2904052(-) (clpX) [Bacillus subtilis strain BS49]
ATGTTTAAATTTAACGAGGAAAAAGGACAATTAAAATGCTCGTTCTGTGGAAAAACACAAGATCAGGTTCGTAAGCTTGT
AGCTGGACCTGGTGTATATATATGTGACGAATGTATCGAACTCTGCACTGAAATTGTAGAGGAAGAACTCGGAACAGAAG
AAGAAGTAGAATTTAAAGACGTACCAAAGCCTCAGGAAATTCGCGAAATTTTGAATGAATATGTCATCGGCCAAGATCAA
GCGAAGAAATCACTTGCTGTTGCTGTGTATAACCACTATAAGCGCATTAACTCCAACAGCAAAGTTGATGATGTTGAGCT
TTCAAAAAGTAATATTTCATTAATCGGCCCTACGGGAAGCGGTAAAACCCTTCTGGCGCAAACATTGGCTCGCATTTTAA
ATGTGCCGTTTGCGATTGCGGACGCTACATCTTTGACTGAAGCTGGATACGTGGGTGAAGATGTAGAGAATATTCTCTTG
AAGCTCATCCAAGCTGCTGATTATGATGTGGAAAAAGCCGAAAAAGGCATTATCTATATTGATGAAATCGATAAAGTGGC
TAGAAAATCTGAAAACCCGTCTATCACACGTGATGTGTCAGGTGAGGGTGTACAGCAGGCATTGCTTAAAATTCTTGAGG
GTACAGTGGCAAGCGTACCGCCTCAAGGTGGACGTAAGCATCCTCATCAAGAATTCATTCAAATTGACACAACAAATATT
TTGTTCATTTGCGGCGGAGCTTTCGATGGTATCGAACAAATCATCAAACGCCGTTTAGGCCAAAAAGTGATTGGATTCGG
TGCCGACAATAAAGCTGCTGATCTTGAGAAAGAAGATCTTCTTTCAAAAGTGCTTCCAGAAGATTTGCTCCGTTTCGGGT
TAATTCCTGAATTTATCGGACGTCTTCCGGTTATTGCAAGCCTTGAAAAGCTTGACGAAGAAGCATTGGTTGCGATCTTA
ACAAAACCGAAAAACGCTCTTGTTAAGCAATTCAAGAAAATGCTTGAGCTTGACAACGTTGAGCTTGAGTTTGAAGAAGA
AGCGCTTTCTGAAATTGCTAAAAAAGCAATTGAACGCAAGACTGGAGCACGCGGACTCCGTTCTATCATTGAAGGCATCA
TGCTTGATGTGATGTTTGAGCTGCCTTCTCGTGATGACATTGAAAAATGTGTAATCACCGGGGCAACTGTGACACACGGA
GAGCCTCCTCGCCTCTTATTAAAAGACGGCACTGAGGTAAGCCAAGATAAAACATCTGCATAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (109-305)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (311-389)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	68.01	94.524	0.643
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	60.506	94.048	0.569