Detailed information NTG0991062

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAH413_RS21905
• Genome accession: NZ_CP153608
• Coordinates: 4419208..4420008 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain Kpn60
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4414208..4425008

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAH413_RS21870 (AAH413_21825)	gspH	4414364..4414879 (+)	516	WP_021313445.1	type II secretion system minor pseudopilin GspH	-
AAH413_RS21875 (AAH413_21830)	gspI	4414876..4415241 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
AAH413_RS21880 (AAH413_21835)	gspJ	4415238..4415834 (+)	597	WP_048969424.1	type II secretion system minor pseudopilin GspJ	-
AAH413_RS21885 (AAH413_21840)	gspK	4415831..4416817 (+)	987	WP_004213439.1	type II secretion system minor pseudopilin GspK	-
AAH413_RS21890 (AAH413_21845)	gspL	4416804..4417997 (+)	1194	WP_048969425.1	type II secretion system protein GspL	-
AAH413_RS21895 (AAH413_21850)	-	4417990..4418475 (+)	486	WP_004151943.1	type II secretion system protein M	-
AAH413_RS21900 (AAH413_21855)	-	4418465..4419211 (+)	747	WP_004145897.1	type II secretion system protein N	-
AAH413_RS21905 (AAH413_21860)	pilD	4419208..4420008 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
AAH413_RS21910 (AAH413_21865)	hrpB	4420056..4422485 (-)	2430	WP_020804570.1	ATP-dependent helicase HrpB	-
AAH413_RS21915 (AAH413_21870)	thpR	4422558..4423094 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
AAH413_RS21920 (AAH413_21875)	sfsA	4423094..4423810 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
AAH413_RS21925 (AAH413_21880)	dksA	4423973..4424428 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=991062 AAH413_RS21905 WP_004145898.1 4419208..4420008(+) (pilD) [Klebsiella pneumoniae strain Kpn60]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=991062 AAH413_RS21905 WP_004145898.1 4419208..4420008(+) (pilD) [Klebsiella pneumoniae strain Kpn60]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425