Detailed information NTG0991038

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAH434_RS21020
• Genome accession: NZ_CP153603
• Coordinates: 4253700..4254500 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain Kpn5459
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4248700..4259500

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAH434_RS20985 (AAH434_20945)	gspH	4248856..4249371 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
AAH434_RS20990 (AAH434_20950)	gspI	4249368..4249733 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
AAH434_RS20995 (AAH434_20955)	gspJ	4249730..4250326 (+)	597	WP_023286045.1	type II secretion system minor pseudopilin GspJ	-
AAH434_RS21000 (AAH434_20960)	gspK	4250323..4251309 (+)	987	WP_021467522.1	type II secretion system minor pseudopilin GspK	-
AAH434_RS21005 (AAH434_20965)	gspL	4251296..4252489 (+)	1194	WP_373858198.1	type II secretion system protein GspL	-
AAH434_RS21010 (AAH434_20970)	-	4252482..4252967 (+)	486	WP_004145896.1	type II secretion system protein M	-
AAH434_RS21015 (AAH434_20975)	-	4252957..4253703 (+)	747	WP_004145897.1	type II secretion system protein N	-
AAH434_RS21020 (AAH434_20980)	pilD	4253700..4254500 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
AAH434_RS21025 (AAH434_20985)	hrpB	4254548..4256977 (-)	2430	WP_064145607.1	ATP-dependent helicase HrpB	-
AAH434_RS21030 (AAH434_20990)	thpR	4257050..4257586 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
AAH434_RS21035 (AAH434_20995)	sfsA	4257586..4258302 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
AAH434_RS21040 (AAH434_21000)	dksA	4258465..4258920 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=991038 AAH434_RS21020 WP_004145898.1 4253700..4254500(+) (pilD) [Klebsiella pneumoniae strain Kpn5459]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=991038 AAH434_RS21020 WP_004145898.1 4253700..4254500(+) (pilD) [Klebsiella pneumoniae strain Kpn5459]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGTCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425