Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   SRS_RS08880 Genome accession   NZ_LN626917
Coordinates   1756641..1757903 (-) Length   420 a.a.
NCBI ID   WP_045179236.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1751641..1762903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SRS_RS08855 - 1751839..1752507 (-) 669 WP_000805946.1 uroporphyrinogen-III synthase -
  SRS_RS08860 hemC 1752529..1753455 (-) 927 WP_001230225.1 hydroxymethylbilane synthase -
  SRS_RS08865 ccsA 1753497..1754312 (-) 816 WP_001157326.1 cytochrome c biogenesis protein -
  SRS_RS08870 hemA 1754334..1755680 (-) 1347 WP_000545456.1 glutamyl-tRNA reductase -
  SRS_RS08875 yihA 1755897..1756487 (-) 591 WP_000867694.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  SRS_RS08880 clpX 1756641..1757903 (-) 1263 WP_045179236.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  SRS_RS08885 tig 1758054..1759355 (-) 1302 WP_045179237.1 trigger factor -
  SRS_RS08890 - 1759403..1759513 (-) 111 WP_001790560.1 hypothetical protein -
  SRS_RS08895 - 1759518..1760447 (-) 930 WP_001280016.1 hypothetical protein -
  SRS_RS08900 - 1760466..1761074 (-) 609 WP_000032653.1 NUDIX domain-containing protein -
  SRS_RS08910 rplT 1761216..1761572 (-) 357 WP_001138360.1 50S ribosomal protein L20 -
  SRS_RS08915 rpmI 1761619..1761819 (-) 201 WP_001125540.1 50S ribosomal protein L35 -
  SRS_RS08920 infC 1761848..1762375 (-) 528 WP_001791219.1 translation initiation factor IF-3 -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46295.44 Da        Isoelectric Point: 4.2645

>NTDB_id=990984 SRS_RS08880 WP_045179236.1 1756641..1757903(-) (clpX) [Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1]
MFKFNEDEENLKCSFCGKDQDQVKKLVAGSGVYICNECIELCSEIVEEELAQNTSEAITELPTPKEIMDHLNEYVIGQEK
AKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTESGYVGDDVENIL
LRLIQAADFDIDKAEKGIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQIDTTN
ILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIPEFIGRVPIVANLETLDVTALKNIL
TQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKAIERKTGARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTINEE
TEPELYDAEGNLINNSKTSA

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=990984 SRS_RS08880 WP_045179236.1 1756641..1757903(-) (clpX) [Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1]
ATGTTTAAATTCAATGAAGATGAAGAAAATTTGAAATGCTCTTTCTGCGGAAAAGACCAAGATCAAGTAAAAAAACTTGT
AGCAGGAAGTGGTGTATATATTTGTAATGAGTGTATTGAATTATGCTCAGAAATCGTCGAAGAAGAATTAGCTCAAAACA
CTTCTGAAGCGATTACAGAATTACCTACTCCTAAAGAAATTATGGATCATTTAAACGAATATGTTATTGGTCAAGAAAAA
GCTAAAAAATCTTTAGCTGTGGCTGTTTATAACCACTATAAGCGTATTCAACAATTAGGACCAAAAGAAGATGATGTTGA
GTTACAAAAAAGTAACATTGCCTTAATTGGGCCAACAGGTAGTGGTAAAACATTATTAGCTCAAACATTAGCCAAGACGT
TGAATGTACCATTTGCAATTGCAGATGCGACAAGTTTAACTGAATCTGGTTATGTAGGCGATGATGTTGAAAATATCTTG
TTGAGATTAATTCAAGCAGCTGACTTTGACATTGATAAAGCCGAAAAAGGTATTATTTATGTAGATGAAATTGATAAAAT
TGCACGTAAATCTGAAAACACATCTATAACACGTGACGTTTCAGGTGAAGGTGTTCAACAAGCATTGCTTAAAATCTTAG
AAGGTACAACTGCAAGTGTTCCGCCACAAGGTGGACGCAAACATCCAAACCAAGAAATGATTCAAATTGATACAACAAAT
ATCTTATTTATTCTTGGTGGTGCCTTTGATGGTATTGAAGAAGTGATTAAGCGCCGTCTTGGTGAAAAAGTTATTGGTTT
CTCAAGCAATGAAGCTGATAAATATGACGAACAAGCATTATTAGCACAAATTCGCCCAGAAGATTTGCAAGCCTATGGTT
TGATTCCTGAATTTATCGGACGTGTGCCAATTGTAGCTAATTTAGAAACATTAGATGTAACTGCGTTGAAAAACATCTTA
ACGCAACCTAAAAATGCACTTGTGAAACAATATACTAAAATGCTGGAATTAGATGATGTAGATTTAGAGTTCACTGAAGA
AGCTTTATCAGCAATTAGTGAAAAAGCAATTGAAAGAAAAACAGGTGCGCGTGGTTTACGTTCAATCATAGAAGAATCGT
TAATCGATATTATGTTTGATGTGCCTTCTAACGAAAATGTAACGAAGGTAGTTATTACAGCACAAACAATTAATGAAGAA
ACTGAACCAGAATTATACGACGCAGAAGGTAATTTAATTAATAATAGTAAAACATCAGCTTAA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-305)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

66.667

95

0.633
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.203

94.048

0.529