Detailed information NTG0990967

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAH425_RS21195
• Genome accession: NZ_CP153595
• Coordinates: 4293840..4294640 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain Kpn629
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4288840..4299640

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAH425_RS21160 (AAH425_21095)	gspH	4288996..4289511 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
AAH425_RS21165 (AAH425_21100)	gspI	4289508..4289873 (+)	366	WP_065811636.1	type II secretion system minor pseudopilin GspI	-
AAH425_RS21170 (AAH425_21105)	gspJ	4289870..4290466 (+)	597	WP_023286045.1	type II secretion system minor pseudopilin GspJ	-
AAH425_RS21175 (AAH425_21110)	gspK	4290463..4291449 (+)	987	WP_021467522.1	type II secretion system minor pseudopilin GspK	-
AAH425_RS21180 (AAH425_21115)	gspL	4291436..4292629 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
AAH425_RS21185 (AAH425_21120)	-	4292622..4293107 (+)	486	WP_004145896.1	type II secretion system protein M	-
AAH425_RS21190 (AAH425_21125)	-	4293097..4293843 (+)	747	WP_004145897.1	type II secretion system protein N	-
AAH425_RS21195 (AAH425_21130)	pilD	4293840..4294640 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
AAH425_RS21200 (AAH425_21135)	hrpB	4294688..4297117 (-)	2430	WP_064145607.1	ATP-dependent helicase HrpB	-
AAH425_RS21205 (AAH425_21140)	thpR	4297190..4297726 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
AAH425_RS21210 (AAH425_21145)	sfsA	4297726..4298442 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
AAH425_RS21215 (AAH425_21150)	dksA	4298605..4299060 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=990967 AAH425_RS21195 WP_004145898.1 4293840..4294640(+) (pilD) [Klebsiella pneumoniae strain Kpn629]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=990967 AAH425_RS21195 WP_004145898.1 4293840..4294640(+) (pilD) [Klebsiella pneumoniae strain Kpn629]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGTCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425