Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SP4011_RS01880 Genome accession   NZ_AP026968
Coordinates   348013..349773 (+) Length   586 a.a.
NCBI ID   WP_338619612.1    Uniprot ID   -
Organism   Streptococcus parapneumoniae strain SP4011     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 343013..354773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP4011_RS01865 (SP4011_03300) - 344916..345632 (+) 717 WP_338619608.1 YebC/PmpR family DNA-binding transcriptional regulator -
  SP4011_RS01870 (SP4011_03310) - 345809..346279 (+) 471 WP_338619609.1 MarR family winged helix-turn-helix transcriptional regulator -
  SP4011_RS01875 (SP4011_03320) rcrP 346254..348023 (+) 1770 WP_338619611.1 ABC transporter ATP-binding protein Regulator
  SP4011_RS01880 (SP4011_03330) rcrQ 348013..349773 (+) 1761 WP_338619612.1 ABC transporter ATP-binding protein Regulator
  SP4011_RS01885 (SP4011_03340) - 349869..350372 (+) 504 WP_338619613.1 phosphatase PAP2 family protein -
  SP4011_RS01890 (SP4011_03350) - 350635..350832 (+) 198 Protein_340 N-acetylmuramoyl-L-alanine amidase family protein -
  SP4011_RS01895 (SP4011_03360) - 351024..351323 (+) 300 WP_261045464.1 DUF4651 domain-containing protein -
  SP4011_RS01900 (SP4011_03370) - 351320..351637 (+) 318 WP_261045465.1 thioredoxin family protein -
  SP4011_RS01905 (SP4011_03380) ytpR 351653..352279 (+) 627 WP_338619617.1 YtpR family tRNA-binding protein -
  SP4011_RS01910 (SP4011_03390) - 352321..353082 (+) 762 WP_262081327.1 SDR family NAD(P)-dependent oxidoreductase -
  SP4011_RS01915 (SP4011_03400) ssbB/cilA 353160..353555 (+) 396 WP_000282442.1 single-stranded DNA-binding protein Machinery gene
  SP4011_RS01920 (SP4011_03410) - 353643..354608 (+) 966 WP_338619622.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64684.45 Da        Isoelectric Point: 4.8541

>NTDB_id=99096 SP4011_RS01880 WP_338619612.1 348013..349773(+) (rcrQ) [Streptococcus parapneumoniae strain SP4011]
MENKKMTLWKQSKPYLAGLQFALLIAFLATIVSNIITVYGPTRIKEMTNIIASGLGTSVDVAAVAAIGGFLAVIYVIGLL
SNYLQAFLFTTAIQRFSERLRTAIAEKINRLPLGYFDGHSQGDTLSRVTNDVDTAAQSLNQSLGTVLSSSLLVLAVLVTM
FGMNWILALVTVVSTLIGFVFVSVFMGKSQGFFKSQQQDLAAVNGYVEEMYSGHNVVTSYNAIESTKEEFAKLNNRLYDS
IWKSQFISGIMMPIMMFIGNFSYALVIIVGAALALNGHISIGIIVAFMAYVRIFSQPLSQIAQGITSLQQASAAMGRVFE
FLAEEEMEDESHKERQLSDMKGQVVFDRVSFGYTPERTIIHDFSAIAHAGQKVAIVGPTGAGKTTIVNLLMKFYEIDKGS
IRIDGVDTKEMKRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQEGISDERVIEASKAVGIHHFIMTLPDGYDTVLDDTVTL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGN
HDELMAQAGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=99096 SP4011_RS01880 WP_338619612.1 348013..349773(+) (rcrQ) [Streptococcus parapneumoniae strain SP4011]
ATGGAAAATAAGAAAATGACTCTTTGGAAACAGAGTAAACCCTATCTTGCAGGTCTCCAGTTTGCCCTTCTAATTGCCTT
TCTAGCAACAATCGTATCCAATATCATTACTGTATATGGTCCAACCCGTATCAAGGAAATGACCAATATCATTGCCAGTG
GTCTGGGAACCAGTGTAGATGTCGCGGCGGTTGCAGCTATTGGTGGTTTTTTGGCCGTGATTTATGTGATTGGACTTCTA
TCAAATTATTTACAGGCCTTTCTGTTTACAACAGCTATTCAACGTTTTTCAGAGCGTTTAAGAACAGCCATTGCAGAGAA
AATCAATCGCCTACCATTGGGATATTTTGATGGCCATTCTCAAGGAGATACCTTGTCTCGTGTAACCAATGACGTTGACA
CTGCAGCCCAGTCCCTTAATCAAAGTCTGGGAACAGTTCTTTCATCTAGTTTATTGGTCTTAGCAGTCTTGGTAACCATG
TTTGGGATGAACTGGATTTTAGCCTTGGTGACGGTTGTGTCAACTCTTATCGGTTTTGTTTTCGTGTCCGTCTTTATGGG
CAAATCACAGGGCTTCTTTAAGAGTCAGCAGCAAGATTTGGCAGCTGTCAATGGCTATGTGGAGGAAATGTACTCTGGCC
ATAATGTGGTGACCAGTTACAATGCTATCGAGAGCACGAAAGAAGAGTTTGCGAAATTAAACAATCGTCTGTATGATAGT
ATCTGGAAATCTCAATTTATTTCAGGGATTATGATGCCGATTATGATGTTTATTGGGAACTTTAGTTATGCCTTAGTGAT
TATTGTTGGTGCAGCCTTGGCTCTGAATGGGCACATCAGTATCGGGATTATCGTTGCCTTTATGGCCTACGTTCGTATCT
TTTCTCAGCCCCTTTCTCAAATTGCTCAAGGGATTACTAGTTTGCAGCAGGCTAGCGCAGCCATGGGGCGTGTCTTCGAA
TTTCTAGCTGAAGAGGAAATGGAAGATGAATCCCATAAAGAAAGACAATTGAGCGATATGAAAGGTCAAGTGGTCTTTGA
TCGAGTTTCCTTTGGCTACACACCAGAGCGAACCATTATCCATGACTTTTCTGCGATAGCTCATGCAGGTCAAAAGGTTG
CCATTGTTGGACCGACCGGGGCTGGTAAGACAACTATTGTTAATCTTTTGATGAAGTTCTATGAGATTGATAAGGGAAGT
ATCCGCATCGATGGCGTGGATACCAAGGAGATGAAGCGTTCGGAAGTACATGATGCCTTTTCAATGGTCCTGCAGGATAC
TTGGCTCTTTGAAGGTACTATCCGAGATAATCTCATCTATAACCAAGAGGGGATTAGTGATGAGCGCGTGATTGAAGCCA
GCAAGGCTGTAGGGATTCACCACTTTATCATGACCCTACCAGATGGTTACGATACCGTCTTGGACGACACGGTGACCTTG
TCTGTCGGGCAAAAACAACTCTTGACTATCGCTCGTGCTTTGTTGAAAGATGCACCGCTCTTGATTTTAGATGAGGCGAC
CTCTTCTGTTGATACACGGACGGAGGAATTGATTCAGAAAGCCATGGACCGTTTGATGGAGGGAAGAACTTCCTTTGTCA
TCGCCCACCGCTTGTCAACTATCCGAAATGCTGATCTTATTCTCGTCATGAAAGATGGCAATATCATCGAGCAAGGAAAT
CATGATGAGCTGATGGCGCAAGCTGGTTTCTACGCTGACCTCTATAACAGTCAGTTTACAGAAGACGAAGCAGAAGAATA
A

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(363-508)

ABC transporter transmembrane region (ABC_membrane)

(23-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

66.781

99.659

0.666

Multiple sequence alignment