Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SP4011_RS01875 Genome accession   NZ_AP026968
Coordinates   346254..348023 (+) Length   589 a.a.
NCBI ID   WP_338619611.1    Uniprot ID   -
Organism   Streptococcus parapneumoniae strain SP4011     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 341254..353023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP4011_RS01845 (SP4011_03260) - 341333..341791 (+) 459 WP_338619605.1 DUF4231 domain-containing protein -
  SP4011_RS01850 (SP4011_03270) - 341804..342412 (+) 609 WP_262081332.1 hypothetical protein -
  SP4011_RS01855 (SP4011_03280) - 342405..342815 (+) 411 WP_023936458.1 hypothetical protein -
  SP4011_RS01860 (SP4011_03290) ply 342826..344241 (+) 1416 WP_173214609.1 cholesterol-dependent cytolysin pneumolysin -
  SP4011_RS01865 (SP4011_03300) - 344916..345632 (+) 717 WP_338619608.1 YebC/PmpR family DNA-binding transcriptional regulator -
  SP4011_RS01870 (SP4011_03310) - 345809..346279 (+) 471 WP_338619609.1 MarR family winged helix-turn-helix transcriptional regulator -
  SP4011_RS01875 (SP4011_03320) rcrP 346254..348023 (+) 1770 WP_338619611.1 ABC transporter ATP-binding protein Regulator
  SP4011_RS01880 (SP4011_03330) rcrQ 348013..349773 (+) 1761 WP_338619612.1 ABC transporter ATP-binding protein Regulator
  SP4011_RS01885 (SP4011_03340) - 349869..350372 (+) 504 WP_338619613.1 phosphatase PAP2 family protein -
  SP4011_RS01890 (SP4011_03350) - 350635..350832 (+) 198 Protein_340 N-acetylmuramoyl-L-alanine amidase family protein -
  SP4011_RS01895 (SP4011_03360) - 351024..351323 (+) 300 WP_261045464.1 DUF4651 domain-containing protein -
  SP4011_RS01900 (SP4011_03370) - 351320..351637 (+) 318 WP_261045465.1 thioredoxin family protein -
  SP4011_RS01905 (SP4011_03380) ytpR 351653..352279 (+) 627 WP_338619617.1 YtpR family tRNA-binding protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65362.87 Da        Isoelectric Point: 6.1994

>NTDB_id=99095 SP4011_RS01875 WP_338619611.1 346254..348023(+) (rcrP) [Streptococcus parapneumoniae strain SP4011]
MKKLAKRISRKEWGMILLAILFTCFSVYLELEVPTYISKITDLLGSQGTNLDELWQPASMMVGMSFLAFLSVVAVGFFAS
RVAASYTSRLRSDIFNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQMLITMGLQVVTRGPIMAIWAIGKILGHSEYWLWA
VLVAVIVNVLMTTVLMTLAFPKQSLIQGLTDKLNSITRESLTGIRVVRAYNAEEYQNEKFAAANDELTRLNLFVNRLMAI
LNPIMMGISSGLSVAIYWIGAYVINDAAPIARLPLFSDMIVFMSYAMQVVMGFLLMGALFIVLPRTMVSAKRINQVLDLH
SSIQNPAQVQLADENLKGQVEFKDVTFRYAANSEAVIENVSFRADAGQTVAFIGSTGSGKSTLVNLIPRFYDVSAGEILV
DGVNVQGYALEDLRNKVGYIPQKAVLFSGDVKDNLDFGQSQETPLSEQAMWQALELAQSKNFIEDKEAGLVSEVAQGGTN
FSGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRVLRQELAEKTKSMTKLIVAQRISTIMDADLILVLDQGKVVGQG
THKELLANNEVYQEIAYSQLSKEELEHGK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=99095 SP4011_RS01875 WP_338619611.1 346254..348023(+) (rcrP) [Streptococcus parapneumoniae strain SP4011]
ATGAAGAAATTAGCCAAACGAATTAGTAGGAAAGAATGGGGGATGATTTTATTAGCCATTCTCTTTACCTGCTTTTCGGT
CTATCTAGAGTTGGAAGTGCCGACCTATATCTCGAAAATTACGGATTTGCTGGGAAGTCAAGGAACTAATTTAGATGAGT
TGTGGCAGCCGGCAAGCATGATGGTGGGAATGTCCTTTCTTGCCTTCTTGTCCGTAGTTGCAGTTGGATTTTTTGCATCC
CGAGTGGCGGCTTCTTATACTAGTAGGCTGAGAAGTGATATTTTTAACCGAGTTTTAGACTACTCGCAGACAGAGATTAA
GAAATTCTCTATTCCCAGTCTTTTAACTCGTACCACCAATGATATTACTCAAGTTCAAATGTTGATTACCATGGGCTTGC
AAGTGGTAACGCGTGGTCCAATTATGGCTATCTGGGCTATTGGGAAGATTTTAGGTCATTCAGAATACTGGCTCTGGGCG
GTACTTGTGGCAGTGATTGTCAACGTCCTGATGACGACTGTTTTGATGACGCTAGCCTTTCCAAAACAGTCCTTGATTCA
GGGGCTGACAGATAAACTGAACAGTATCACTCGTGAAAGTTTAACAGGTATTCGTGTCGTTCGTGCCTACAATGCTGAAG
AATACCAAAATGAAAAATTTGCAGCAGCAAATGATGAATTGACACGCTTGAATTTGTTTGTCAACCGTCTTATGGCTATT
TTGAACCCTATCATGATGGGGATTTCAAGTGGTTTGAGTGTGGCGATTTACTGGATTGGGGCCTATGTGATTAACGACGC
TGCTCCGATAGCGCGTCTGCCTCTCTTTAGTGACATGATTGTTTTCATGTCTTATGCCATGCAGGTTGTCATGGGCTTCC
TTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATCAATCAGGTTTTAGATTTGCAT
TCTTCTATCCAAAATCCTGCTCAAGTGCAGCTGGCTGATGAAAACCTCAAAGGTCAGGTTGAATTTAAGGATGTGACCTT
CCGCTATGCGGCAAATTCGGAGGCGGTTATTGAGAATGTTAGCTTTAGAGCAGACGCTGGTCAAACAGTTGCCTTTATTG
GGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGATGTGTCAGCAGGAGAAATTCTGGTG
GACGGTGTCAATGTTCAAGGCTATGCCTTAGAGGATTTGCGCAACAAGGTTGGTTATATTCCTCAGAAAGCGGTTCTCTT
TTCAGGTGATGTCAAGGACAATTTAGATTTTGGACAGAGTCAAGAAACACCGCTTAGTGAGCAAGCTATGTGGCAAGCCT
TGGAATTGGCCCAGTCTAAGAACTTTATCGAAGACAAGGAAGCGGGCTTAGTGTCAGAAGTGGCCCAAGGAGGAACCAAC
TTCTCAGGTGGTCAAAGACAACGTCTGGCCATTGCGCGTGCCTTGGCTCGGAAGCCAGAAATCCTCATCTTTGATGACTC
CTTCTCAGCCTTGGACTACAAGACAGACCGTGTCCTACGCCAAGAGCTAGCAGAGAAAACCAAGTCTATGACCAAGCTTA
TCGTCGCACAGCGTATTTCAACGATTATGGATGCTGATTTGATTTTGGTCTTGGATCAAGGAAAAGTCGTGGGACAAGGC
ACCCACAAGGAACTTCTAGCTAATAACGAAGTTTACCAAGAAATTGCCTATTCACAACTATCGAAGGAGGAATTGGAACA
TGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-292)

ABC transporter (ABC_tran)

(358-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

66.057

100

0.674

Multiple sequence alignment