Detailed information NTG0990943

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAH431_RS20730
• Genome accession: NZ_CP153593
• Coordinates: 4206649..4207449 (+)
• Length: 266 a.a.
• NCBI ID: WP_040211570.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain Kpn4527
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4201649..4212449

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAH431_RS20695 (AAH431_20660)	gspH	4201805..4202320 (+)	516	WP_117027256.1	type II secretion system minor pseudopilin GspH	-
AAH431_RS20700 (AAH431_20665)	gspI	4202317..4202682 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
AAH431_RS20705 (AAH431_20670)	gspJ	4202679..4203275 (+)	597	WP_004145893.1	type II secretion system minor pseudopilin GspJ	-
AAH431_RS20710 (AAH431_20675)	gspK	4203272..4204258 (+)	987	WP_004177385.1	type II secretion system minor pseudopilin GspK	-
AAH431_RS20715 (AAH431_20680)	gspL	4204245..4205438 (+)	1194	WP_087830065.1	type II secretion system protein GspL	-
AAH431_RS20720 (AAH431_20685)	-	4205431..4205916 (+)	486	WP_126478293.1	type II secretion system protein M	-
AAH431_RS20725 (AAH431_20690)	-	4205906..4206652 (+)	747	WP_373859765.1	type II secretion system protein N	-
AAH431_RS20730 (AAH431_20695)	pilD	4206649..4207449 (+)	801	WP_040211570.1	A24 family peptidase	Machinery gene
AAH431_RS20735 (AAH431_20700)	hrpB	4207497..4209926 (-)	2430	WP_126478292.1	ATP-dependent helicase HrpB	-
AAH431_RS20740 (AAH431_20705)	thpR	4209999..4210535 (+)	537	WP_126478291.1	RNA 2',3'-cyclic phosphodiesterase	-
AAH431_RS20745 (AAH431_20710)	sfsA	4210535..4211251 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
AAH431_RS20750 (AAH431_20715)	dksA	4211414..4211869 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=990943 AAH431_RS20730 WP_040211570.1 4206649..4207449(+) (pilD) [Klebsiella pneumoniae strain Kpn4527]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWSRQ
SLQQPLAFGPWLALAGGGIFLWQQMI

Nucleotide

• Length: 801 bp

>NTDB_id=990943 AAH431_RS20730 WP_040211570.1 4206649..4207449(+) (pilD) [Klebsiella pneumoniae strain Kpn4527]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCTTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGAGCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGATCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421