Detailed information NTG0990896

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAHX03_RS21965
• Genome accession: NZ_CP153445
• Coordinates: 4535460..4536260 (+)
• Length: 266 a.a.
• NCBI ID: WP_008807384.1
• Uniprot ID: A0A0J4LMF2
• Organism: Klebsiella variicola subsp. variicola strain NK_H22_009
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4530460..4541260

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHX03_RS21930 (AAHX03_21915)	gspH	4530613..4531128 (+)	516	WP_049157074.1	type II secretion system minor pseudopilin GspH	-
AAHX03_RS21935 (AAHX03_21920)	gspI	4531125..4531490 (+)	366	WP_004894160.1	type II secretion system minor pseudopilin GspI	-
AAHX03_RS21940 (AAHX03_21925)	gspJ	4531487..4532083 (+)	597	WP_023297079.1	type II secretion system minor pseudopilin GspJ	-
AAHX03_RS21945 (AAHX03_21930)	gspK	4532080..4533060 (+)	981	WP_077259001.1	type II secretion system minor pseudopilin GspK	-
AAHX03_RS21950 (AAHX03_21935)	gspL	4533053..4534249 (+)	1197	WP_373852956.1	type II secretion system protein GspL	-
AAHX03_RS21955 (AAHX03_21940)	-	4534242..4534727 (+)	486	WP_012968921.1	type II secretion system protein M	-
AAHX03_RS21960 (AAHX03_21945)	-	4534717..4535463 (+)	747	WP_049157077.1	type II secretion system protein N	-
AAHX03_RS21965 (AAHX03_21950)	pilD	4535460..4536260 (+)	801	WP_008807384.1	A24 family peptidase	Machinery gene
AAHX03_RS21970 (AAHX03_21955)	hrpB	4536307..4538736 (-)	2430	WP_023322075.1	ATP-dependent helicase HrpB	-
AAHX03_RS21975 (AAHX03_21960)	thpR	4538809..4539345 (+)	537	WP_008807387.1	RNA 2',3'-cyclic phosphodiesterase	-
AAHX03_RS21980 (AAHX03_21965)	sfsA	4539345..4540061 (+)	717	WP_049157674.1	DNA/RNA nuclease SfsA	-
AAHX03_RS21985 (AAHX03_21970)	dksA	4540224..4540679 (+)	456	WP_007749299.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29433.14 Da
• Isoelectric Point: 8.7151

>NTDB_id=990896 AAHX03_RS21965 WP_008807384.1 4535460..4536260(+) (pilD) [Klebsiella variicola subsp. variicola strain NK_H22_009]
MTTLTALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLLLLSFLLMLARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASACGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=990896 AAHX03_RS21965 WP_008807384.1 4535460..4536260(+) (pilD) [Klebsiella variicola subsp. variicola strain NK_H22_009]
ATGACGACATTAACGGCATTATCGCTGCACTTTCCCCTTGTCTGGTATGGCTTCCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCCTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGCTGCTGCTCTCGTTCCTGCTGATGCTGGCGC
GGATTGACGCCCGGACCCAGCTGTTGCCCGACCGTCTGACGCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGACGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCCTCGGCCTGCGGGCTGGTGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGAGGGGGCATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

3D structure

• AlphaFold DB: A0A0J4LMF2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.455	100	0.47
pilD	Acinetobacter nosocomialis M2	45.627	98.872	0.451
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425