Detailed information NTG0990850

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAHX44_RS23000
• Genome accession: NZ_CP153424
• Coordinates: 4634665..4635465 (+)
• Length: 266 a.a.
• NCBI ID: WP_023322076.1
• Uniprot ID: -
• Organism: Klebsiella variicola subsp. variicola strain NK_H4_006
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4629665..4640465

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHX44_RS22965 (AAHX44_22945)	gspH	4629818..4630333 (+)	516	WP_064180712.1	type II secretion system minor pseudopilin GspH	-
AAHX44_RS22970 (AAHX44_22950)	gspI	4630330..4630695 (+)	366	WP_004894160.1	type II secretion system minor pseudopilin GspI	-
AAHX44_RS22975 (AAHX44_22955)	gspJ	4630692..4631288 (+)	597	WP_008807379.1	type II secretion system minor pseudopilin GspJ	-
AAHX44_RS22980 (AAHX44_22960)	gspK	4631285..4632265 (+)	981	WP_012542824.1	type II secretion system minor pseudopilin GspK	-
AAHX44_RS22985 (AAHX44_22965)	gspL	4632258..4633454 (+)	1197	WP_373890285.1	type II secretion system protein GspL	-
AAHX44_RS22990 (AAHX44_22970)	-	4633447..4633932 (+)	486	WP_012968921.1	type II secretion system protein M	-
AAHX44_RS22995 (AAHX44_22975)	-	4633922..4634668 (+)	747	WP_072124978.1	type II secretion system protein N	-
AAHX44_RS23000 (AAHX44_22980)	pilD	4634665..4635465 (+)	801	WP_023322076.1	A24 family peptidase	Machinery gene
AAHX44_RS23005 (AAHX44_22985)	hrpB	4635512..4637941 (-)	2430	WP_016160309.1	ATP-dependent helicase HrpB	-
AAHX44_RS23010 (AAHX44_22990)	thpR	4638014..4638550 (+)	537	WP_008807387.1	RNA 2',3'-cyclic phosphodiesterase	-
AAHX44_RS23015 (AAHX44_22995)	sfsA	4638550..4639266 (+)	717	WP_008807388.1	DNA/RNA nuclease SfsA	-
AAHX44_RS23020 (AAHX44_23000)	dksA	4639429..4639884 (+)	456	WP_007749299.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29445.19 Da
• Isoelectric Point: 8.7151

>NTDB_id=990850 AAHX44_RS23000 WP_023322076.1 4634665..4635465(+) (pilD) [Klebsiella variicola subsp. variicola strain NK_H4_006]
MTILTALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLLLLSFLLMLARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASACGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=990850 AAHX44_RS23000 WP_023322076.1 4634665..4635465(+) (pilD) [Klebsiella variicola subsp. variicola strain NK_H4_006]
ATGACGATATTAACGGCATTATCGCTGCACTTTCCCCTTGTCTGGTATGGCTTCCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCCTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGCTGCTGCTCTCGTTCCTGCTGATGCTGGCGC
GGATTGACGCCCGGACCCAGCTGTTGCCCGACCGTCTGACGCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGACGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCCTCGGCCTGCGGGCTGGTGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGAGGGGGCATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.455	100	0.47
pilD	Acinetobacter nosocomialis M2	45.627	98.872	0.451
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425