Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ACNRMP_RS14735 Genome accession   NZ_JBLWDC010000001
Coordinates   3160303..3160671 (+) Length   122 a.a.
NCBI ID   WP_003269243.1    Uniprot ID   Q8Y1M1
Organism   Ralstonia pseudosolanacearum strain PD 7123     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3155303..3165671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNRMP_RS14710 (ACNRMP_14710) - 3155794..3156420 (-) 627 WP_028852676.1 LemA family protein -
  ACNRMP_RS14715 (ACNRMP_14715) dapA 3156801..3157715 (+) 915 WP_028852677.1 4-hydroxy-tetrahydrodipicolinate synthase -
  ACNRMP_RS14720 (ACNRMP_14720) hemL 3157818..3159119 (-) 1302 WP_020831381.1 glutamate-1-semialdehyde 2,1-aminomutase -
  ACNRMP_RS14725 (ACNRMP_14725) - 3159331..3159513 (+) 183 WP_003261842.1 rubredoxin -
  ACNRMP_RS14730 (ACNRMP_14730) pilG 3159828..3160271 (+) 444 WP_071615340.1 response regulator Regulator
  ACNRMP_RS14735 (ACNRMP_14735) pilH 3160303..3160671 (+) 369 WP_003269243.1 response regulator Machinery gene
  ACNRMP_RS14740 (ACNRMP_14740) - 3160730..3161275 (+) 546 WP_028852678.1 chemotaxis protein CheW -
  ACNRMP_RS14745 (ACNRMP_14745) - 3161521..3163752 (+) 2232 WP_011000626.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13482.73 Da        Isoelectric Point: 4.9328

>NTDB_id=990727 ACNRMP_RS14735 WP_003269243.1 3160303..3160671(+) (pilH) [Ralstonia pseudosolanacearum strain PD 7123]
MAIKKILVVDDSPTEALFLSEILSKNGFKVSVAADSDQAMAKLEGEPFDLVLMDVVMPGQNGYQATRAIKKDDRFKDIPV
IICTTKGLETDRVWGMRQGASDYIVKPVKAEELLEKIAKLPQ

Nucleotide


Download         Length: 369 bp        

>NTDB_id=990727 ACNRMP_RS14735 WP_003269243.1 3160303..3160671(+) (pilH) [Ralstonia pseudosolanacearum strain PD 7123]
ATGGCAATCAAAAAGATTCTGGTGGTTGATGACTCCCCCACCGAAGCACTGTTCCTGTCGGAAATCCTGAGCAAGAACGG
TTTCAAGGTGTCGGTCGCGGCCGACAGCGACCAGGCCATGGCCAAGCTGGAAGGCGAGCCTTTCGACCTGGTCCTGATGG
ACGTGGTGATGCCCGGCCAGAACGGCTACCAGGCCACCCGCGCGATCAAGAAGGACGATCGCTTCAAGGACATCCCGGTG
ATCATCTGCACCACCAAGGGCCTGGAGACCGACCGCGTGTGGGGCATGCGCCAGGGCGCGTCGGACTACATCGTCAAGCC
GGTCAAGGCAGAAGAGCTGCTCGAAAAGATCGCCAAGCTGCCGCAGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y1M1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

44.915

96.721

0.434