Detailed information NTG0990709

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAHV87_RS21630
• Genome accession: NZ_CP153314
• Coordinates: 4465618..4466418 (+)
• Length: 266 a.a.
• NCBI ID: WP_049162648.1
• Uniprot ID: -
• Organism: Klebsiella variicola subsp. variicola strain KP_NORM_URN_57455
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4460618..4471418

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHV87_RS21595 (AAHV87_21580)	gspH	4460771..4461286 (+)	516	WP_008807378.1	type II secretion system minor pseudopilin GspH	-
AAHV87_RS21600 (AAHV87_21585)	gspI	4461283..4461648 (+)	366	WP_004894160.1	type II secretion system minor pseudopilin GspI	-
AAHV87_RS21605 (AAHV87_21590)	gspJ	4461645..4462241 (+)	597	WP_039102857.1	type II secretion system minor pseudopilin GspJ	-
AAHV87_RS21610 (AAHV87_21595)	gspK	4462238..4463218 (+)	981	WP_077264701.1	type II secretion system minor pseudopilin GspK	-
AAHV87_RS21615 (AAHV87_21600)	gspL	4463211..4464407 (+)	1197	WP_072125473.1	type II secretion system protein GspL	-
AAHV87_RS21620 (AAHV87_21605)	-	4464400..4464885 (+)	486	WP_008807382.1	type II secretion system protein M	-
AAHV87_RS21625 (AAHV87_21610)	-	4464875..4465621 (+)	747	WP_023322077.1	type II secretion system protein N	-
AAHV87_RS21630 (AAHV87_21615)	pilD	4465618..4466418 (+)	801	WP_049162648.1	A24 family peptidase	Machinery gene
AAHV87_RS21635 (AAHV87_21620)	hrpB	4466465..4468894 (-)	2430	WP_046620841.1	ATP-dependent helicase HrpB	-
AAHV87_RS21640 (AAHV87_21625)	thpR	4468967..4469503 (+)	537	WP_008807387.1	RNA 2',3'-cyclic phosphodiesterase	-
AAHV87_RS21645 (AAHV87_21630)	sfsA	4469503..4470219 (+)	717	WP_008807388.1	DNA/RNA nuclease SfsA	-
AAHV87_RS21650 (AAHV87_21635)	dksA	4470382..4470837 (+)	456	WP_007749299.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29380.09 Da
• Isoelectric Point: 8.3695

>NTDB_id=990709 AAHV87_RS21630 WP_049162648.1 4465618..4466418(+) (pilD) [Klebsiella variicola subsp. variicola strain KP_NORM_URN_57455]
MTTLTALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLLLLSFLLMLARIDARTQLLPDCLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASACGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=990709 AAHV87_RS21630 WP_049162648.1 4465618..4466418(+) (pilD) [Klebsiella variicola subsp. variicola strain KP_NORM_URN_57455]
ATGACGACATTAACGGCATTATCGCTGCACTTTCCCCTTGTCTGGTATGGCTTCCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCCTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGCTGCTGCTCTCGTTCCTGCTGATGCTGGCGC
GGATTGACGCCCGAACCCAGCTGCTGCCCGACTGTCTGACGCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAAGTGTACATTGCCCTGCCGGACGCGGTCGCCGGGGCAATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCCTCGGCCTGCGGTCTGGTGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCACTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGAGGGGGCATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (123-231)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.455	100	0.47
pilD	Acinetobacter nosocomialis M2	45.247	98.872	0.447
pilD	Acinetobacter baumannii D1279779	44.487	98.872	0.44
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425