Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | AAHY03_RS22410 | Genome accession | NZ_CP153277 |
| Coordinates | 4598269..4599069 (+) | Length | 266 a.a. |
| NCBI ID | WP_008807384.1 | Uniprot ID | A0A0J4LMF2 |
| Organism | Klebsiella variicola subsp. variicola strain T7-179 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4593269..4604069
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAHY03_RS22375 (AAHY03_22345) | gspH | 4593422..4593937 (+) | 516 | WP_072123494.1 | type II secretion system minor pseudopilin GspH | - |
| AAHY03_RS22380 (AAHY03_22350) | gspI | 4593934..4594299 (+) | 366 | WP_004894160.1 | type II secretion system minor pseudopilin GspI | - |
| AAHY03_RS22385 (AAHY03_22355) | gspJ | 4594296..4594892 (+) | 597 | WP_008807379.1 | type II secretion system minor pseudopilin GspJ | - |
| AAHY03_RS22390 (AAHY03_22360) | gspK | 4594889..4595869 (+) | 981 | WP_012542824.1 | type II secretion system minor pseudopilin GspK | - |
| AAHY03_RS22395 (AAHY03_22365) | gspL | 4595862..4597058 (+) | 1197 | WP_110409017.1 | type II secretion system protein GspL | - |
| AAHY03_RS22400 (AAHY03_22370) | - | 4597051..4597536 (+) | 486 | WP_012968921.1 | type II secretion system protein M | - |
| AAHY03_RS22405 (AAHY03_22375) | - | 4597526..4598272 (+) | 747 | WP_243814498.1 | type II secretion system protein N | - |
| AAHY03_RS22410 (AAHY03_22380) | pilD | 4598269..4599069 (+) | 801 | WP_008807384.1 | A24 family peptidase | Machinery gene |
| AAHY03_RS22415 (AAHY03_22385) | hrpB | 4599116..4601545 (-) | 2430 | WP_232684282.1 | ATP-dependent helicase HrpB | - |
| AAHY03_RS22420 (AAHY03_22390) | thpR | 4601618..4602154 (+) | 537 | WP_008807387.1 | RNA 2',3'-cyclic phosphodiesterase | - |
| AAHY03_RS22425 (AAHY03_22395) | sfsA | 4602154..4602870 (+) | 717 | WP_008807388.1 | DNA/RNA nuclease SfsA | - |
| AAHY03_RS22430 (AAHY03_22400) | dksA | 4603033..4603488 (+) | 456 | WP_007749299.1 | RNA polymerase-binding protein DksA | - |
Sequence
Protein
Download Length: 266 a.a. Molecular weight: 29433.14 Da Isoelectric Point: 8.7151
>NTDB_id=990638 AAHY03_RS22410 WP_008807384.1 4598269..4599069(+) (pilD) [Klebsiella variicola subsp. variicola strain T7-179]
MTTLTALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLLLLSFLLMLARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASACGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV
MTTLTALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLLLLSFLLMLARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASACGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV
Nucleotide
Download Length: 801 bp
>NTDB_id=990638 AAHY03_RS22410 WP_008807384.1 4598269..4599069(+) (pilD) [Klebsiella variicola subsp. variicola strain T7-179]
ATGACGACATTAACGGCATTATCGCTGCACTTTCCCCTTGTCTGGTATGGCTTCCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCCTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGCTGCTGCTCTCGTTCCTGCTGATGCTGGCGC
GGATTGACGCCCGGACCCAGCTGTTGCCCGACCGTCTGACGCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGACGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGAGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCCTCGGCCTGCGGGCTGGTGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGAGGGGGCATTTTTCTCTGGCAGCAGATGGTCTA
G
ATGACGACATTAACGGCATTATCGCTGCACTTTCCCCTTGTCTGGTATGGCTTCCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCCTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGCTGCTGCTCTCGTTCCTGCTGATGCTGGCGC
GGATTGACGCCCGGACCCAGCTGTTGCCCGACCGTCTGACGCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGACGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGAGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCCTCGGCCTGCGGGCTGGTGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGAGGGGGCATTTTTCTCTGGCAGCAGATGGTCTA
G
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
49.434 |
99.624 |
0.492 |
| pilD | Vibrio campbellii strain DS40M4 |
45.455 |
100 |
0.47 |
| pilD | Acinetobacter nosocomialis M2 |
45.627 |
98.872 |
0.451 |
| pilD | Acinetobacter baumannii D1279779 |
44.867 |
98.872 |
0.444 |
| pilD | Neisseria gonorrhoeae MS11 |
43.295 |
98.12 |
0.425 |