Detailed information NTG0990570

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAHX80_RS22920
• Genome accession: NZ_CP153207
• Coordinates: 4698198..4698998 (+)
• Length: 266 a.a.
• NCBI ID: WP_023297075.1
• Uniprot ID: -
• Organism: Klebsiella variicola subsp. variicola strain T7-032
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4693198..4703998

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHX80_RS22885 (AAHX80_22890)	gspH	4693351..4693866 (+)	516	WP_008807378.1	type II secretion system minor pseudopilin GspH	-
AAHX80_RS22890 (AAHX80_22895)	gspI	4693863..4694228 (+)	366	WP_004894160.1	type II secretion system minor pseudopilin GspI	-
AAHX80_RS22895 (AAHX80_22900)	gspJ	4694225..4694821 (+)	597	WP_008807379.1	type II secretion system minor pseudopilin GspJ	-
AAHX80_RS22900 (AAHX80_22905)	gspK	4694818..4695798 (+)	981	WP_012542824.1	type II secretion system minor pseudopilin GspK	-
AAHX80_RS22905 (AAHX80_22910)	gspL	4695791..4696987 (+)	1197	WP_046882115.1	type II secretion system protein GspL	-
AAHX80_RS22910 (AAHX80_22915)	-	4696980..4697465 (+)	486	WP_012968921.1	type II secretion system protein M	-
AAHX80_RS22915 (AAHX80_22920)	-	4697455..4698201 (+)	747	WP_188203574.1	type II secretion system protein N	-
AAHX80_RS22920 (AAHX80_22925)	pilD	4698198..4698998 (+)	801	WP_023297075.1	A24 family peptidase	Machinery gene
AAHX80_RS22925 (AAHX80_22930)	hrpB	4699045..4701474 (-)	2430	WP_080930493.1	ATP-dependent helicase HrpB	-
AAHX80_RS22930 (AAHX80_22935)	thpR	4701547..4702083 (+)	537	WP_008807387.1	RNA 2',3'-cyclic phosphodiesterase	-
AAHX80_RS22935 (AAHX80_22940)	sfsA	4702083..4702799 (+)	717	WP_008807388.1	DNA/RNA nuclease SfsA	-
AAHX80_RS22940 (AAHX80_22945)	dksA	4702962..4703417 (+)	456	WP_007749299.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29491.18 Da
• Isoelectric Point: 8.4742

>NTDB_id=990570 AAHX80_RS22920 WP_023297075.1 4698198..4698998(+) (pilD) [Klebsiella variicola subsp. variicola strain T7-032]
MTTLTALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIEWSYPLTELATGLLFILAGALLAPGLPLAGGLLLLSFLLMLARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASACGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=990570 AAHX80_RS22920 WP_023297075.1 4698198..4698998(+) (pilD) [Klebsiella variicola subsp. variicola strain T7-032]
ATGACGACATTAACGGCATTATCGCTGCACTTTCCCCTTGTCTGGTATGGCTTCCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCCTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGAGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGCTGCTGCTCTCGTTCCTGCTGATGCTGGCGC
GGATTGACGCCCGGACCCAGCTGTTGCCCGACCGTCTGACGCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGACGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCCTCGGCCTGCGGGCTGGTGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGAGGGGGCATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.455	100	0.47
pilD	Acinetobacter nosocomialis M2	45.627	98.872	0.451
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425