Detailed information NTG0990499

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAHX88_RS21540
• Genome accession: NZ_CP153183
• Coordinates: 4423032..4423832 (+)
• Length: 266 a.a.
• NCBI ID: WP_087827522.1
• Uniprot ID: -
• Organism: Klebsiella quasipneumoniae subsp. quasipneumoniae strain T7-089
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4418032..4428832

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHX88_RS21505 (AAHX88_21450)	gspH	4418185..4418700 (+)	516	WP_065882744.1	type II secretion system minor pseudopilin GspH	-
AAHX88_RS21510 (AAHX88_21455)	gspI	4418697..4419062 (+)	366	WP_032452553.1	type II secretion system minor pseudopilin GspI	-
AAHX88_RS21515 (AAHX88_21460)	gspJ	4419059..4419655 (+)	597	WP_101977666.1	type II secretion system minor pseudopilin GspJ	-
AAHX88_RS21520 (AAHX88_21465)	gspK	4419652..4420632 (+)	981	WP_374026715.1	type II secretion system minor pseudopilin GspK	-
AAHX88_RS21525 (AAHX88_21470)	gspL	4420625..4421821 (+)	1197	WP_374026716.1	type II secretion system protein GspL	-
AAHX88_RS21530 (AAHX88_21475)	-	4421814..4422299 (+)	486	WP_023292019.1	type II secretion system protein M	-
AAHX88_RS21535 (AAHX88_21480)	-	4422289..4423017 (+)	729	WP_049014316.1	type II secretion system protein N	-
AAHX88_RS21540 (AAHX88_21485)	pilD	4423032..4423832 (+)	801	WP_087827522.1	A24 family peptidase	Machinery gene
AAHX88_RS21545 (AAHX88_21490)	hrpB	4423880..4426309 (-)	2430	WP_064155382.1	ATP-dependent helicase HrpB	-
AAHX88_RS21550 (AAHX88_21495)	thpR	4426382..4426918 (+)	537	WP_023292015.1	RNA 2',3'-cyclic phosphodiesterase	-
AAHX88_RS21555 (AAHX88_21500)	sfsA	4426918..4427634 (+)	717	WP_023292014.1	DNA/RNA nuclease SfsA	-
AAHX88_RS21560 (AAHX88_21505)	dksA	4427797..4428252 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29290.88 Da
• Isoelectric Point: 8.7151

>NTDB_id=990499 AAHX88_RS21540 WP_087827522.1 4423032..4423832(+) (pilD) [Klebsiella quasipneumoniae subsp. quasipneumoniae strain T7-089]
MTTLAALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDEPITLSTPGSCCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQARISWSYPLTELATGLLFILAGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQALPQVLLLASASGLAWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=990499 AAHX88_RS21540 WP_087827522.1 4423032..4423832(+) (pilD) [Klebsiella quasipneumoniae subsp. quasipneumoniae strain T7-089]
ATGACGACATTAGCCGCATTATCGCTGCATTTTCCCCTTGTCTGGTATGGTTTCCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGACCCAAACCGCGGACGACGAGCCGATAACCCTCAGCA
CGCCGGGCTCATGCTGCCCGCAGTGTCGCCAGCCGATAGCCTGGCGGGACAATATCCCGCTGCTCAGCTTCCTCTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGCCTGGCGCTGGCGGGCGGCCTGGTGCTGCTCTCCTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTTAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCCCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGCTCTGCCGCAGGTGCTGTTGCTCGCCTCGGCCAGCGGGCTGGCGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.455	100	0.47
pilD	Acinetobacter nosocomialis M2	45.627	98.872	0.451
pilD	Acinetobacter baumannii D1279779	44.487	98.872	0.44
pilD	Neisseria gonorrhoeae MS11	43.678	98.12	0.429