Detailed information NTG0990405

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAHY38_RS22300
• Genome accession: NZ_CP153091
• Coordinates: 4574940..4575740 (+)
• Length: 266 a.a.
• NCBI ID: WP_008807384.1
• Uniprot ID: A0A0J4LMF2
• Organism: Klebsiella variicola subsp. variicola strain T7-402
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4569940..4580740

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHY38_RS22265 (AAHY38_22250)	gspH	4570093..4570608 (+)	516	WP_049157074.1	type II secretion system minor pseudopilin GspH	-
AAHY38_RS22270 (AAHY38_22255)	gspI	4570605..4570970 (+)	366	WP_049139126.1	type II secretion system minor pseudopilin GspI	-
AAHY38_RS22275 (AAHY38_22260)	gspJ	4570967..4571563 (+)	597	WP_110198358.1	type II secretion system minor pseudopilin GspJ	-
AAHY38_RS22280 (AAHY38_22265)	gspK	4571560..4572540 (+)	981	WP_374747229.1	type II secretion system minor pseudopilin GspK	-
AAHY38_RS22285 (AAHY38_22270)	gspL	4572533..4573729 (+)	1197	WP_374747230.1	type II secretion system protein GspL	-
AAHY38_RS22290 (AAHY38_22275)	-	4573722..4574207 (+)	486	WP_012968921.1	type II secretion system protein M	-
AAHY38_RS22295 (AAHY38_22280)	-	4574197..4574943 (+)	747	WP_374747231.1	type II secretion system protein N	-
AAHY38_RS22300 (AAHY38_22285)	pilD	4574940..4575740 (+)	801	WP_008807384.1	A24 family peptidase	Machinery gene
AAHY38_RS22305 (AAHY38_22290)	hrpB	4575787..4578216 (-)	2430	WP_374747232.1	ATP-dependent helicase HrpB	-
AAHY38_RS22310 (AAHY38_22295)	thpR	4578289..4578825 (+)	537	WP_008807387.1	RNA 2',3'-cyclic phosphodiesterase	-
AAHY38_RS22315 (AAHY38_22300)	sfsA	4578825..4579541 (+)	717	WP_008807388.1	DNA/RNA nuclease SfsA	-
AAHY38_RS22320 (AAHY38_22305)	dksA	4579704..4580159 (+)	456	WP_007749299.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29433.14 Da
• Isoelectric Point: 8.7151

>NTDB_id=990405 AAHY38_RS22300 WP_008807384.1 4574940..4575740(+) (pilD) [Klebsiella variicola subsp. variicola strain T7-402]
MTTLTALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLLLLSFLLMLARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASACGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=990405 AAHY38_RS22300 WP_008807384.1 4574940..4575740(+) (pilD) [Klebsiella variicola subsp. variicola strain T7-402]
ATGACGACATTAACGGCATTATCGCTGCACTTTCCCCTTGTCTGGTATGGCTTCCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCCTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGCTGCTGCTCTCGTTCCTGCTGATGCTGGCGC
GGATTGACGCCCGGACCCAGCTGTTGCCCGACCGTCTGACGCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGACGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCCTCGGCCTGCGGGCTGGTGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGAGGGGGCATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

3D structure

• AlphaFold DB: A0A0J4LMF2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.455	100	0.47
pilD	Acinetobacter nosocomialis M2	45.627	98.872	0.451
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425