Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | AAHY41_RS21540 | Genome accession | NZ_CP153076 |
| Coordinates | 4417400..4418200 (+) | Length | 266 a.a. |
| NCBI ID | WP_008807384.1 | Uniprot ID | A0A0J4LMF2 |
| Organism | Klebsiella variicola subsp. variicola strain T7-424 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4412400..4423200
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAHY41_RS21505 (AAHY41_21485) | gspH | 4412553..4413068 (+) | 516 | WP_008807378.1 | type II secretion system minor pseudopilin GspH | - |
| AAHY41_RS21510 (AAHY41_21490) | gspI | 4413065..4413430 (+) | 366 | WP_004894160.1 | type II secretion system minor pseudopilin GspI | - |
| AAHY41_RS21515 (AAHY41_21495) | gspJ | 4413427..4414023 (+) | 597 | WP_008807379.1 | type II secretion system minor pseudopilin GspJ | - |
| AAHY41_RS21520 (AAHY41_21500) | gspK | 4414020..4415000 (+) | 981 | WP_022065362.1 | type II secretion system minor pseudopilin GspK | - |
| AAHY41_RS21525 (AAHY41_21505) | gspL | 4414993..4416189 (+) | 1197 | WP_032740434.1 | type II secretion system protein GspL | - |
| AAHY41_RS21530 (AAHY41_21510) | - | 4416182..4416667 (+) | 486 | WP_040972974.1 | type II secretion system protein M | - |
| AAHY41_RS21535 (AAHY41_21515) | - | 4416657..4417403 (+) | 747 | WP_040972972.1 | type II secretion system protein N | - |
| AAHY41_RS21540 (AAHY41_21520) | pilD | 4417400..4418200 (+) | 801 | WP_008807384.1 | A24 family peptidase | Machinery gene |
| AAHY41_RS21545 (AAHY41_21525) | hrpB | 4418247..4420676 (-) | 2430 | WP_040972970.1 | ATP-dependent helicase HrpB | - |
| AAHY41_RS21550 (AAHY41_21530) | thpR | 4420749..4421285 (+) | 537 | WP_008807387.1 | RNA 2',3'-cyclic phosphodiesterase | - |
| AAHY41_RS21555 (AAHY41_21535) | sfsA | 4421285..4422001 (+) | 717 | WP_022066362.1 | DNA/RNA nuclease SfsA | - |
| AAHY41_RS21560 (AAHY41_21540) | dksA | 4422164..4422619 (+) | 456 | WP_007749299.1 | RNA polymerase-binding protein DksA | - |
Sequence
Protein
Download Length: 266 a.a. Molecular weight: 29433.14 Da Isoelectric Point: 8.7151
>NTDB_id=990382 AAHY41_RS21540 WP_008807384.1 4417400..4418200(+) (pilD) [Klebsiella variicola subsp. variicola strain T7-424]
MTTLTALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLLLLSFLLMLARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASACGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV
MTTLTALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLLLLSFLLMLARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASACGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV
Nucleotide
Download Length: 801 bp
>NTDB_id=990382 AAHY41_RS21540 WP_008807384.1 4417400..4418200(+) (pilD) [Klebsiella variicola subsp. variicola strain T7-424]
ATGACGACATTAACGGCATTATCGCTGCACTTTCCCCTTGTCTGGTATGGCTTCCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCCTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGCTGCTGCTCTCGTTCCTGCTGATGCTGGCGC
GGATTGACGCCCGGACCCAGCTGTTGCCCGACCGTCTGACGCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGACGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCCTCGGCCTGCGGGCTGGTGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGAGGGGGCATTTTTCTCTGGCAGCAGATGGTCTA
G
ATGACGACATTAACGGCATTATCGCTGCACTTTCCCCTTGTCTGGTATGGCTTCCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCCTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGCTGCTGCTCTCGTTCCTGCTGATGCTGGCGC
GGATTGACGCCCGGACCCAGCTGTTGCCCGACCGTCTGACGCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGACGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCCTCGGCCTGCGGGCTGGTGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGAGGGGGCATTTTTCTCTGGCAGCAGATGGTCTA
G
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
49.434 |
99.624 |
0.492 |
| pilD | Vibrio campbellii strain DS40M4 |
45.455 |
100 |
0.47 |
| pilD | Acinetobacter nosocomialis M2 |
45.627 |
98.872 |
0.451 |
| pilD | Acinetobacter baumannii D1279779 |
44.867 |
98.872 |
0.444 |
| pilD | Neisseria gonorrhoeae MS11 |
43.295 |
98.12 |
0.425 |