Detailed information NTG0990220

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAHY20_RS20495
• Genome accession: NZ_CP153014
• Coordinates: 4209864..4210664 (+)
• Length: 266 a.a.
• NCBI ID: WP_049093658.1
• Uniprot ID: -
• Organism: Klebsiella quasipneumoniae subsp. similipneumoniae strain T7-266
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4204864..4215664

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHY20_RS20460 (AAHY20_20440)	gspH	4205017..4205532 (+)	516	WP_064187722.1	type II secretion system minor pseudopilin GspH	-
AAHY20_RS20465 (AAHY20_20445)	gspI	4205529..4205894 (+)	366	WP_064187721.1	type II secretion system minor pseudopilin GspI	-
AAHY20_RS20470 (AAHY20_20450)	gspJ	4205891..4206487 (+)	597	WP_048323018.1	type II secretion system minor pseudopilin GspJ	-
AAHY20_RS20475 (AAHY20_20455)	gspK	4206484..4207464 (+)	981	WP_004204412.1	type II secretion system minor pseudopilin GspK	-
AAHY20_RS20480 (AAHY20_20460)	gspL	4207457..4208653 (+)	1197	WP_136073545.1	type II secretion system protein GspL	-
AAHY20_RS20485 (AAHY20_20465)	-	4208646..4209131 (+)	486	WP_043521988.1	type II secretion system protein M	-
AAHY20_RS20490 (AAHY20_20470)	-	4209121..4209849 (+)	729	WP_049093659.1	type II secretion system protein N	-
AAHY20_RS20495 (AAHY20_20475)	pilD	4209864..4210664 (+)	801	WP_049093658.1	A24 family peptidase	Machinery gene
AAHY20_RS20500 (AAHY20_20480)	hrpB	4210712..4213141 (-)	2430	WP_153245303.1	ATP-dependent helicase HrpB	-
AAHY20_RS20505 (AAHY20_20485)	thpR	4213214..4213750 (+)	537	WP_004204405.1	RNA 2',3'-cyclic phosphodiesterase	-
AAHY20_RS20510 (AAHY20_20490)	sfsA	4213750..4214466 (+)	717	WP_004204404.1	DNA/RNA nuclease SfsA	-
AAHY20_RS20515 (AAHY20_20495)	dksA	4214629..4215084 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29382.98 Da
• Isoelectric Point: 8.8894

>NTDB_id=990220 AAHY20_RS20495 WP_049093658.1 4209864..4210664(+) (pilD) [Klebsiella quasipneumoniae subsp. similipneumoniae strain T7-266]
MTTLAALSLHFPLIWYGFLLLFGLALGSFYNVVIYRLPRMLAQTADDEPLTLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQARISWSYPLTELTTGLLFILAGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQALPQVLLFASASGLMWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=990220 AAHY20_RS20495 WP_049093658.1 4209864..4210664(+) (pilD) [Klebsiella quasipneumoniae subsp. similipneumoniae strain T7-266]
ATGACGACATTAGCCGCATTATCGCTGCATTTCCCTCTTATCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGGCCCAGACCGCGGACGACGAGCCGCTAACCCTCAGCA
CGCCGGGCTCATCCTGTCCGCAGTGTCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGCTTCCTCTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGCTGACCGAGCTGACCACCGGCCTGCTGTTTAT
CCTCGCGGGGGCGCTGCTCGCACCGGGACTGGCGCTGGCGGGCGGCCTGGTGCTGCTCTCCTTTCTGCTGATACTGGCGC
GGATTGATGCCCGGACCCAGCTGCTGCCCGATCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTTAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCCGGGGCGATGGCTGGTTATCTGGCACTGTGGTCGGTCTATTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCTCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGCTCTGCCGCAGGTGCTGTTGTTCGCCTCGGCCAGCGGGCTGATGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425