Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   J5312_RS05965 Genome accession   NZ_JAGFUR010000001
Coordinates   1201995..1203167 (+) Length   390 a.a.
NCBI ID   WP_038693966.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain 20190502E1-H1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1196995..1208167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5312_RS05930 (J5312_05930) folK 1197006..1197431 (-) 426 WP_064971165.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  J5312_RS05935 (J5312_05935) sppA 1197453..1199207 (+) 1755 WP_064971164.1 signal peptide peptidase SppA -
  J5312_RS05940 (J5312_05940) dtd 1199290..1199545 (-) 256 Protein_1176 D-aminoacyl-tRNA deacylase -
  J5312_RS05945 (J5312_05945) - 1199635..1200513 (+) 879 WP_010891297.1 IS982-like element ISRa1 family transposase -
  J5312_RS05950 (J5312_05950) - 1200510..1200983 (-) 474 WP_064971059.1 hypothetical protein -
  J5312_RS05955 (J5312_05955) greA 1201085..1201552 (+) 468 WP_064971058.1 transcription elongation factor GreA -
  J5312_RS05960 (J5312_05960) - 1201571..1201957 (+) 387 WP_064971057.1 HIT family protein -
  J5312_RS05965 (J5312_05965) clpX 1201995..1203167 (+) 1173 WP_038693966.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  J5312_RS05975 (J5312_05975) - 1203254..1205200 (+) 1947 WP_064971056.1 T9SS type A sorting domain-containing protein -
  J5312_RS05980 (J5312_05980) - 1205212..1205463 (+) 252 WP_064971055.1 hypothetical protein -
  J5312_RS05985 (J5312_05985) - 1205525..1206802 (+) 1278 WP_237190410.1 peroxiredoxin -

Sequence

Protein


Download         Length: 390 a.a.        Molecular weight: 43886.49 Da        Isoelectric Point: 5.7920

>NTDB_id=990205 J5312_RS05965 WP_038693966.1 1201995..1203167(+) (clpX) [Riemerella anatipestifer strain 20190502E1-H1]
MNNNQCSFCGRHRKEVQMLVSGQNGLICEHCIEQAHAFVKDNIQKEEFSPISTLSELKKPREIKKTLDEYVIGQDQAKKQ
LSIAVYNHYKRLLHSSTKKDNDVEIEKSNIIMIGETGTGKTLLAKTIARELNVPFCIVDATILTEAGYVGEDVESILSRL
LMVADYDVEKAEKGIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKYIQVNTQNILF
IAGGAFDGIKEIIERRLNKQAIGFSKEKLDSEKDLAQILPQVNSTDLRKFGLIPELLGRFPVITYLDQLTKETMVRIMKE
PKNSIVNQFKALFKIDGIDLEFTDEALEKIVDETFEKGLGARGLRGTTEKVLEDYMFDIDIISKNKITIN

Nucleotide


Download         Length: 1173 bp        

>NTDB_id=990205 J5312_RS05965 WP_038693966.1 1201995..1203167(+) (clpX) [Riemerella anatipestifer strain 20190502E1-H1]
ATGAATAATAACCAGTGTTCTTTTTGCGGAAGACATCGTAAAGAAGTTCAAATGTTAGTTTCGGGACAAAACGGACTTAT
CTGCGAACATTGTATAGAACAAGCTCACGCATTTGTTAAAGACAATATTCAGAAAGAAGAATTCTCTCCTATAAGTACCC
TCTCCGAACTAAAGAAACCTAGAGAAATTAAAAAAACTCTAGACGAATATGTCATCGGACAAGACCAAGCTAAAAAACAA
CTTTCCATCGCAGTCTATAACCATTATAAAAGACTTCTTCACTCTTCAACAAAAAAAGACAATGATGTTGAAATAGAAAA
ATCTAACATCATTATGATAGGTGAAACAGGCACAGGAAAAACCCTTTTAGCGAAAACCATTGCAAGAGAACTTAATGTCC
CTTTTTGTATTGTAGACGCTACTATACTTACCGAAGCTGGTTATGTAGGCGAAGATGTAGAGAGTATTTTATCTAGACTT
CTTATGGTCGCTGATTACGATGTAGAGAAAGCCGAAAAAGGCATTGTATTCATAGATGAAATAGATAAAATAGCGAGAAA
ATCAGATAATCCAAGCATCACAAGAGATGTATCAGGAGAAGGTGTACAACAAGGATTATTAAAGTTATTGGAAGGAAGCA
TTGTAAATGTACCGCCTCAAGGAGGAAGAAAACACCCTGACCAAAAATACATACAAGTAAACACACAAAATATCCTATTC
ATTGCTGGAGGGGCTTTTGATGGTATAAAAGAAATTATAGAAAGGAGACTAAACAAACAAGCCATAGGCTTTAGTAAAGA
AAAACTAGATTCCGAAAAAGATTTGGCACAGATATTGCCACAAGTAAACTCAACGGATTTGAGAAAGTTCGGATTAATTC
CAGAACTTTTAGGTAGATTCCCTGTAATTACTTATTTAGACCAACTAACCAAAGAGACCATGGTAAGAATAATGAAAGAG
CCAAAAAACTCTATTGTTAATCAATTCAAAGCTCTTTTCAAAATAGACGGTATAGATTTAGAGTTCACAGACGAAGCCTT
AGAGAAAATTGTAGATGAAACTTTTGAAAAAGGATTAGGTGCAAGAGGACTTAGAGGCACTACAGAAAAGGTTTTAGAAG
ATTACATGTTTGATATAGATATAATATCCAAAAATAAAATTACAATAAATTAA

Domains

Predicted by InterProScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(5-40)

AAA domain (Cdc48 subfamily) (AAA_2)

(106-303)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(309-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

52.785

96.667

0.51
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.979

97.179

0.505

Multiple sequence alignment