Detailed information NTG0990150

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAHW26_RS20855
• Genome accession: NZ_CP152924
• Coordinates: 4256935..4257735 (+)
• Length: 266 a.a.
• NCBI ID: WP_049116597.1
• Uniprot ID: -
• Organism: Klebsiella quasipneumoniae subsp. similipneumoniae strain NK_H12_057
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4251935..4262735

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHW26_RS20820 (AAHW26_20750)	gspH	4252088..4252603 (+)	516	WP_004204416.1	type II secretion system minor pseudopilin GspH	-
AAHW26_RS20825 (AAHW26_20755)	gspI	4252600..4252965 (+)	366	WP_004204415.1	type II secretion system minor pseudopilin GspI	-
AAHW26_RS20830 (AAHW26_20760)	gspJ	4252962..4253558 (+)	597	WP_032426022.1	type II secretion system minor pseudopilin GspJ	-
AAHW26_RS20835 (AAHW26_20765)	gspK	4253555..4254535 (+)	981	WP_151385100.1	type II secretion system minor pseudopilin GspK	-
AAHW26_RS20840 (AAHW26_20770)	gspL	4254528..4255724 (+)	1197	WP_277449372.1	type II secretion system protein GspL	-
AAHW26_RS20845 (AAHW26_20775)	-	4255717..4256202 (+)	486	WP_004204409.1	type II secretion system protein M	-
AAHW26_RS20850 (AAHW26_20780)	-	4256192..4256920 (+)	729	WP_374063415.1	type II secretion system protein N	-
AAHW26_RS20855 (AAHW26_20785)	pilD	4256935..4257735 (+)	801	WP_049116597.1	A24 family peptidase	Machinery gene
AAHW26_RS20860 (AAHW26_20790)	hrpB	4257783..4260212 (-)	2430	WP_374063416.1	ATP-dependent helicase HrpB	-
AAHW26_RS20865 (AAHW26_20795)	thpR	4260285..4260821 (+)	537	WP_004204405.1	RNA 2',3'-cyclic phosphodiesterase	-
AAHW26_RS20870 (AAHW26_20800)	sfsA	4260821..4261537 (+)	717	WP_004204404.1	DNA/RNA nuclease SfsA	-
AAHW26_RS20875 (AAHW26_20805)	dksA	4261700..4262155 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29368.95 Da
• Isoelectric Point: 8.8894

>NTDB_id=990150 AAHW26_RS20855 WP_049116597.1 4256935..4257735(+) (pilD) [Klebsiella quasipneumoniae subsp. similipneumoniae strain NK_H12_057]
MTTLAALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLAQTADDEPLTLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQARISWSYPLTELTTGLLFILAGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQALPQVLLFASASGLMWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=990150 AAHW26_RS20855 WP_049116597.1 4256935..4257735(+) (pilD) [Klebsiella quasipneumoniae subsp. similipneumoniae strain NK_H12_057]
ATGACGACATTAGCCGCATTATCGCTGCATTTCCCCCTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGGCCCAGACCGCGGACGACGAGCCGCTAACCCTCAGCA
CGCCGGGCTCATCCTGTCCGCAGTGTCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGCTTCCTCTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGCTGACCGAGCTGACCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGACTGGCGCTGGCGGGCGGCCTGGTGCTGCTCTCCTTTCTGCTGATACTGGCGC
GGATTGATGCCCGGACCCAGCTGCTGCCCGATCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTTAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCCGGGGCGATGGCTGGTTATCTGGCACTGTGGTCGGTCTATTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCTCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGCTCTGCCGCAGGTGCTGTTGTTCGCCTCGGCCAGCGGGCTGATGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425