Detailed information NTG0990056

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAHW35_RS21395
• Genome accession: NZ_CP152902
• Coordinates: 4334946..4335746 (+)
• Length: 266 a.a.
• NCBI ID: WP_049116597.1
• Uniprot ID: -
• Organism: Klebsiella quasipneumoniae subsp. similipneumoniae strain NK_H14_015
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4329946..4340746

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHW35_RS21360 (AAHW35_21340)	gspH	4330099..4330614 (+)	516	WP_053810751.1	type II secretion system minor pseudopilin GspH	-
AAHW35_RS21365 (AAHW35_21345)	gspI	4330611..4330976 (+)	366	WP_053810752.1	type II secretion system minor pseudopilin GspI	-
AAHW35_RS21370 (AAHW35_21350)	gspJ	4330973..4331569 (+)	597	WP_048323018.1	type II secretion system minor pseudopilin GspJ	-
AAHW35_RS21375 (AAHW35_21355)	gspK	4331566..4332546 (+)	981	WP_077268679.1	type II secretion system minor pseudopilin GspK	-
AAHW35_RS21380 (AAHW35_21360)	gspL	4332539..4333735 (+)	1197	WP_064187719.1	type II secretion system protein GspL	-
AAHW35_RS21385 (AAHW35_21365)	-	4333728..4334213 (+)	486	WP_043521988.1	type II secretion system protein M	-
AAHW35_RS21390 (AAHW35_21370)	-	4334203..4334931 (+)	729	WP_064178512.1	type II secretion system protein N	-
AAHW35_RS21395 (AAHW35_21375)	pilD	4334946..4335746 (+)	801	WP_049116597.1	A24 family peptidase	Machinery gene
AAHW35_RS21400 (AAHW35_21380)	hrpB	4335794..4338223 (-)	2430	WP_374404895.1	ATP-dependent helicase HrpB	-
AAHW35_RS21405 (AAHW35_21385)	thpR	4338296..4338832 (+)	537	WP_049116602.1	RNA 2',3'-cyclic phosphodiesterase	-
AAHW35_RS21410 (AAHW35_21390)	sfsA	4338832..4339548 (+)	717	WP_004204404.1	DNA/RNA nuclease SfsA	-
AAHW35_RS21415 (AAHW35_21395)	dksA	4339711..4340166 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29368.95 Da
• Isoelectric Point: 8.8894

>NTDB_id=990056 AAHW35_RS21395 WP_049116597.1 4334946..4335746(+) (pilD) [Klebsiella quasipneumoniae subsp. similipneumoniae strain NK_H14_015]
MTTLAALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLAQTADDEPLTLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQARISWSYPLTELTTGLLFILAGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQALPQVLLFASASGLMWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=990056 AAHW35_RS21395 WP_049116597.1 4334946..4335746(+) (pilD) [Klebsiella quasipneumoniae subsp. similipneumoniae strain NK_H14_015]
ATGACGACATTAGCCGCATTATCGCTGCATTTCCCCCTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGGCCCAGACCGCGGACGACGAGCCGCTAACCCTCAGCA
CGCCGGGCTCATCCTGTCCGCAGTGTCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGCTTCCTCTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGCTGACCGAGCTGACCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGACTGGCACTGGCGGGCGGCCTGGTGCTGCTCTCCTTTCTGCTGATACTGGCGC
GGATTGATGCCCGGACCCAGCTGCTGCCCGATCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTTAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCCGGGGCGATGGCTGGTTATCTGGCACTGTGGTCGGTCTATTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCTCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGCTCTGCCGCAGGTGCTGTTGTTCGCCTCGGCCAGCGGGCTGATGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425