Detailed information NTG0990009

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAHW39_RS21920
• Genome accession: NZ_CP152886
• Coordinates: 4495912..4496712 (+)
• Length: 266 a.a.
• NCBI ID: WP_188203575.1
• Uniprot ID: -
• Organism: Klebsiella variicola subsp. variicola strain NK_H14_042
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4490912..4501712

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHW39_RS21885 (AAHW39_21890)	gspH	4491065..4491580 (+)	516	WP_008807378.1	type II secretion system minor pseudopilin GspH	-
AAHW39_RS21890 (AAHW39_21895)	gspI	4491577..4491942 (+)	366	WP_004894160.1	type II secretion system minor pseudopilin GspI	-
AAHW39_RS21895 (AAHW39_21900)	gspJ	4491939..4492535 (+)	597	WP_032736669.1	type II secretion system minor pseudopilin GspJ	-
AAHW39_RS21900 (AAHW39_21905)	gspK	4492532..4493512 (+)	981	WP_077267227.1	type II secretion system minor pseudopilin GspK	-
AAHW39_RS21905 (AAHW39_21910)	gspL	4493505..4494701 (+)	1197	WP_032740434.1	type II secretion system protein GspL	-
AAHW39_RS21910 (AAHW39_21915)	-	4494694..4495179 (+)	486	WP_012968921.1	type II secretion system protein M	-
AAHW39_RS21915 (AAHW39_21920)	-	4495169..4495915 (+)	747	WP_188203574.1	type II secretion system protein N	-
AAHW39_RS21920 (AAHW39_21925)	pilD	4495912..4496712 (+)	801	WP_188203575.1	A24 family peptidase	Machinery gene
AAHW39_RS21925 (AAHW39_21930)	hrpB	4496759..4499188 (-)	2430	WP_188203576.1	ATP-dependent helicase HrpB	-
AAHW39_RS21930 (AAHW39_21935)	thpR	4499261..4499797 (+)	537	WP_008807387.1	RNA 2',3'-cyclic phosphodiesterase	-
AAHW39_RS21935 (AAHW39_21940)	sfsA	4499797..4500513 (+)	717	WP_022066362.1	DNA/RNA nuclease SfsA	-
AAHW39_RS21940 (AAHW39_21945)	dksA	4500676..4501131 (+)	456	WP_007749299.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29448.11 Da
• Isoelectric Point: 8.7151

>NTDB_id=990009 AAHW39_RS21920 WP_188203575.1 4495912..4496712(+) (pilD) [Klebsiella variicola subsp. variicola strain NK_H14_042]
MTTLTALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLLLLSFLLMLARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASACGLVWTLQQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=990009 AAHW39_RS21920 WP_188203575.1 4495912..4496712(+) (pilD) [Klebsiella variicola subsp. variicola strain NK_H14_042]
ATGACGACATTAACGGCATTATCGCTGCACTTTCCCCTTGTCTGGTATGGCTTCCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCCTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGCTGCTGCTCTCGTTCCTGCTGATGCTGGCGC
GGATTGACGCCCGGACCCAGCTGTTGCCCGACCGTCTGACGCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGACGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCCTCGGCCTGCGGGCTGGTGTGGACCCTGCAGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGAGGGGGCATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (123-231)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.455	100	0.47
pilD	Acinetobacter nosocomialis M2	45.627	98.872	0.451
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425