Detailed information NTG0989986

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAHW42_RS20650
• Genome accession: NZ_CP152879
• Coordinates: 4229430..4230230 (+)
• Length: 266 a.a.
• NCBI ID: WP_094334303.1
• Uniprot ID: -
• Organism: Klebsiella quasipneumoniae subsp. similipneumoniae strain NK_H14_058
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4224430..4235230

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHW42_RS20615 (AAHW42_20570)	gspH	4224583..4225098 (+)	516	WP_004204416.1	type II secretion system minor pseudopilin GspH	-
AAHW42_RS20620 (AAHW42_20575)	gspI	4225095..4225460 (+)	366	WP_004204415.1	type II secretion system minor pseudopilin GspI	-
AAHW42_RS20625 (AAHW42_20580)	gspJ	4225457..4226053 (+)	597	WP_032426022.1	type II secretion system minor pseudopilin GspJ	-
AAHW42_RS20630 (AAHW42_20585)	gspK	4226050..4227030 (+)	981	WP_374245118.1	type II secretion system minor pseudopilin GspK	-
AAHW42_RS20635 (AAHW42_20590)	gspL	4227023..4228219 (+)	1197	WP_192079265.1	type II secretion system protein GspL	-
AAHW42_RS20640 (AAHW42_20595)	-	4228212..4228697 (+)	486	WP_100098541.1	type II secretion system protein M	-
AAHW42_RS20645 (AAHW42_20600)	-	4228687..4229415 (+)	729	WP_043521990.1	type II secretion system protein N	-
AAHW42_RS20650 (AAHW42_20605)	pilD	4229430..4230230 (+)	801	WP_094334303.1	A24 family peptidase	Machinery gene
AAHW42_RS20655 (AAHW42_20610)	hrpB	4230278..4232707 (-)	2430	WP_032455567.1	ATP-dependent helicase HrpB	-
AAHW42_RS20660 (AAHW42_20615)	thpR	4232780..4233316 (+)	537	WP_004204405.1	RNA 2',3'-cyclic phosphodiesterase	-
AAHW42_RS20665 (AAHW42_20620)	sfsA	4233316..4234032 (+)	717	WP_004204404.1	DNA/RNA nuclease SfsA	-
AAHW42_RS20670 (AAHW42_20625)	dksA	4234195..4234650 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29332.90 Da
• Isoelectric Point: 8.8894

>NTDB_id=989986 AAHW42_RS20650 WP_094334303.1 4229430..4230230(+) (pilD) [Klebsiella quasipneumoniae subsp. similipneumoniae strain NK_H14_058]
MTTLAALSLHFPLIWYGFLLLFGLALGSFYNVVIYRLPRMLAQTADDEPLTLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQARISWSYPLTELTTGLLFILAGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLVASASGLTWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=989986 AAHW42_RS20650 WP_094334303.1 4229430..4230230(+) (pilD) [Klebsiella quasipneumoniae subsp. similipneumoniae strain NK_H14_058]
ATGACGACATTAGCCGCATTATCGCTGCATTTCCCTCTTATCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGGCCCAGACCGCGGACGACGAGCCGCTAACCCTCAGCA
CGCCGGGCTCATCTTGTCCGCAGTGTCGCCAGCCGATAGCCTGGCGGGACAATATCCCGCTGCTCAGCTTCCTCTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGCTGACCGAGCTGACCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCACCGGGACTGGCGCTGGCGGGCGGCCTGGTGCTGCTCTCCTTTCTGCTGATACTGGCGC
GGATTGATGCCCGGACCCAGCTGCTGCCCGATCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTTAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCCGGGGCGATGGCTGGTTATCTGGCACTGTGGTCGGTCTATTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCTCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGGTCGCCTCGGCCAGCGGGCTGACGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-230)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425