Detailed information NTG0989894

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAHW61_RS21905
• Genome accession: NZ_CP152823
• Coordinates: 4529421..4530221 (+)
• Length: 266 a.a.
• NCBI ID: WP_032731627.1
• Uniprot ID: -
• Organism: Klebsiella variicola subsp. variicola strain NK_H16_023
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4524421..4535221

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHW61_RS21870 (AAHW61_21845)	gspH	4524574..4525089 (+)	516	WP_008807378.1	type II secretion system minor pseudopilin GspH	-
AAHW61_RS21875 (AAHW61_21850)	gspI	4525086..4525451 (+)	366	WP_004894160.1	type II secretion system minor pseudopilin GspI	-
AAHW61_RS21880 (AAHW61_21855)	gspJ	4525448..4526044 (+)	597	WP_032731630.1	type II secretion system minor pseudopilin GspJ	-
AAHW61_RS21885 (AAHW61_21860)	gspK	4526041..4527021 (+)	981	WP_012542824.1	type II secretion system minor pseudopilin GspK	-
AAHW61_RS21890 (AAHW61_21865)	gspL	4527014..4528210 (+)	1197	WP_032731629.1	type II secretion system protein GspL	-
AAHW61_RS21895 (AAHW61_21870)	-	4528203..4528688 (+)	486	WP_012968921.1	type II secretion system protein M	-
AAHW61_RS21900 (AAHW61_21875)	-	4528678..4529424 (+)	747	WP_032731628.1	type II secretion system protein N	-
AAHW61_RS21905 (AAHW61_21880)	pilD	4529421..4530221 (+)	801	WP_032731627.1	A24 family peptidase	Machinery gene
AAHW61_RS21910 (AAHW61_21885)	hrpB	4530268..4532697 (-)	2430	WP_032731626.1	ATP-dependent helicase HrpB	-
AAHW61_RS21915 (AAHW61_21890)	thpR	4532770..4533306 (+)	537	WP_008807387.1	RNA 2',3'-cyclic phosphodiesterase	-
AAHW61_RS21920 (AAHW61_21895)	sfsA	4533306..4534022 (+)	717	WP_022066362.1	DNA/RNA nuclease SfsA	-
AAHW61_RS21925 (AAHW61_21900)	dksA	4534185..4534640 (+)	456	WP_007749299.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29463.17 Da
• Isoelectric Point: 8.7151

>NTDB_id=989894 AAHW61_RS21905 WP_032731627.1 4529421..4530221(+) (pilD) [Klebsiella variicola subsp. variicola strain NK_H16_023]
MTTLTALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
SRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLLLLSFLLMLARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASACGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=989894 AAHW61_RS21905 WP_032731627.1 4529421..4530221(+) (pilD) [Klebsiella variicola subsp. variicola strain NK_H16_023]
ATGACGACATTAACGGCATTATCGCTGCACTTTCCCCTTGTCTGGTATGGCTTCCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACACTCAGCA
CCCCGGGCTCCTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
AGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGCTGCTGCTCTCGTTCCTGCTGATGCTGGCGC
GGATTGACGCCCGGACCCAGCTGTTGCCCGACCGTCTGACGCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGACGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCCTCGGCCTGCGGGCTGGTGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGAGGGGGCATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (123-231)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.455	100	0.47
pilD	Acinetobacter nosocomialis M2	45.627	98.872	0.451
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425