Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   GBSCOH1_RS02140 Genome accession   NZ_HG939456
Coordinates   384141..385175 (+) Length   344 a.a.
NCBI ID   WP_000732710.1    Uniprot ID   -
Organism   Streptococcus agalactiae COH1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 379141..390175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBSCOH1_RS02105 (GBSCOH1_0346) tsaE 379216..379659 (+) 444 WP_000500161.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  GBSCOH1_RS02110 (GBSCOH1_0347) - 379652..380173 (+) 522 WP_000043149.1 GNAT family N-acetyltransferase -
  GBSCOH1_RS02115 (GBSCOH1_0348) brpA 380182..381489 (+) 1308 WP_000708161.1 biofilm formation/cell division transcriptional regulator BrpA -
  GBSCOH1_RS02120 (GBSCOH1_0349) - 381553..381849 (-) 297 WP_000690175.1 hypothetical protein -
  GBSCOH1_RS02125 (GBSCOH1_0350) - 381846..382265 (-) 420 WP_000368099.1 HIT family protein -
  GBSCOH1_RS02130 (GBSCOH1_0351) - 382601..383104 (+) 504 WP_000773459.1 hypothetical protein -
  GBSCOH1_RS10460 - 383156..383342 (-) 187 Protein_347 hypothetical protein -
  GBSCOH1_RS02135 (GBSCOH1_0352) pptA 383414..384139 (+) 726 WP_000912314.1 ABC transporter ATP-binding protein Regulator
  GBSCOH1_RS02140 (GBSCOH1_0353) pptB 384141..385175 (+) 1035 WP_000732710.1 ABC transporter permease Regulator
  GBSCOH1_RS02145 (GBSCOH1_0354) ccrZ 385233..386033 (+) 801 WP_000155920.1 cell cycle regulator CcrZ -
  GBSCOH1_RS02150 (GBSCOH1_0355) trmB 386023..386658 (+) 636 WP_001266024.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  GBSCOH1_RS02160 (GBSCOH1_0356) rimP 387147..387623 (+) 477 WP_041971671.1 ribosome maturation factor RimP -
  GBSCOH1_RS02165 (GBSCOH1_0357) nusA 387659..388810 (+) 1152 WP_000032295.1 transcription termination factor NusA -
  GBSCOH1_RS02170 (GBSCOH1_0358) rnpM 388832..389128 (+) 297 WP_001140526.1 RNase P modulator RnpM -
  GBSCOH1_RS02175 (GBSCOH1_0359) - 389121..389423 (+) 303 WP_001065560.1 YlxQ-related RNA-binding protein -
  GBSCOH1_RS11395 - 389443..389595 (+) 153 Protein_356 translation initiation factor IF-2 N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40316.74 Da        Isoelectric Point: 10.4543

>NTDB_id=989843 GBSCOH1_RS02140 WP_000732710.1 384141..385175(+) (pptB) [Streptococcus agalactiae COH1]
MKKLFNKRRSLFLTQNSKYLRYVFNDHFVLVLMFLSGFLLYQYSQLLKDFPKTHWPIIVIVSIIILMLLAMGEIASYLEP
ADKQFLLIKEEAIKEIINSAKKRTYIFWLVVQTLFLVLISPILIKLGLSVFMITLLIFGLGIIKWLVITYKVKVFYNNQN
LNWDAAINHEQERKQAILKFFSLFTNVKGISTSVKRRSFLDVILKLISKTPSRLWTNLFVRAFLRSSDYLGLTIRLVTLN
ILSVIFVNETYLALALAFVFNYLLLFQLLALGHHFDYQYMNQLYPVRLNAKASQLKGFLRVLSYAVTVIDIILIRELKPV
ILLIVLMLIVTEYYIPYKIKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=989843 GBSCOH1_RS02140 WP_000732710.1 384141..385175(+) (pptB) [Streptococcus agalactiae COH1]
ATGAAAAAGTTATTTAATAAACGTCGAAGTCTCTTTTTAACTCAAAATAGTAAATATTTGAGATACGTCTTTAATGATCA
TTTTGTATTAGTATTAATGTTTTTGTCAGGTTTTTTGTTATATCAGTATAGCCAGTTACTAAAAGACTTTCCAAAAACAC
ATTGGCCAATTATCGTGATTGTGTCAATCATTATCTTAATGTTACTAGCGATGGGGGAAATAGCCAGCTATTTAGAACCG
GCTGATAAACAATTTTTACTTATAAAAGAAGAAGCAATAAAGGAAATTATAAATTCTGCTAAAAAACGGACTTATATCTT
TTGGTTGGTTGTTCAAACCTTATTTTTAGTATTAATATCACCAATTTTGATAAAGTTAGGCTTGTCAGTTTTTATGATTA
CATTGTTAATTTTTGGTCTAGGAATAATCAAATGGTTGGTGATAACTTACAAGGTAAAGGTCTTTTATAACAATCAAAAT
TTGAACTGGGATGCAGCTATAAATCATGAGCAGGAAAGAAAACAGGCTATATTAAAATTTTTCTCTTTGTTTACAAATGT
TAAGGGAATTTCGACAAGTGTAAAACGTCGTTCATTTTTAGATGTTATTTTAAAACTTATTTCTAAAACGCCATCGCGTT
TATGGACTAACTTATTTGTGAGGGCATTTCTAAGAAGCTCAGATTATCTTGGTTTAACCATAAGGTTGGTAACTTTAAAT
ATCTTATCAGTCATCTTTGTTAACGAAACCTACCTCGCCCTTGCTCTGGCATTTGTATTTAACTACTTATTATTGTTCCA
ATTATTAGCTTTAGGTCACCATTTTGATTATCAATACATGAATCAGCTCTATCCAGTTAGATTAAATGCTAAAGCAAGTC
AGCTAAAAGGTTTTCTCAGAGTGTTATCATATGCTGTGACAGTAATTGATATCATACTTATAAGAGAATTGAAACCTGTT
ATATTATTGATAGTTTTGATGTTAATTGTGACGGAATATTACATCCCTTACAAAATAAAGAAGATGATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(147-330)

Bacterial ABC transporter protein EcsB (EcsB)

(2-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.965

100

0.48
  pptB Streptococcus thermophilus LMD-9

47.674

100

0.477