Detailed information NTG0989755

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAHX02_RS22035
• Genome accession: NZ_CP152713
• Coordinates: 4507347..4508147 (+)
• Length: 266 a.a.
• NCBI ID: WP_023322076.1
• Uniprot ID: -
• Organism: Klebsiella variicola subsp. variicola strain NK_H21_080
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4502347..4513147

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHX02_RS22000 (AAHX02_21985)	gspH	4502500..4503015 (+)	516	WP_155011033.1	type II secretion system minor pseudopilin GspH	-
AAHX02_RS22005 (AAHX02_21990)	gspI	4503012..4503377 (+)	366	WP_155011032.1	type II secretion system minor pseudopilin GspI	-
AAHX02_RS22010 (AAHX02_21995)	gspJ	4503374..4503970 (+)	597	WP_023297079.1	type II secretion system minor pseudopilin GspJ	-
AAHX02_RS22015 (AAHX02_22000)	gspK	4503967..4504947 (+)	981	WP_155011031.1	type II secretion system minor pseudopilin GspK	-
AAHX02_RS22020 (AAHX02_22005)	gspL	4504940..4506136 (+)	1197	WP_072125473.1	type II secretion system protein GspL	-
AAHX02_RS22025 (AAHX02_22010)	-	4506129..4506614 (+)	486	WP_008807382.1	type II secretion system protein M	-
AAHX02_RS22030 (AAHX02_22015)	-	4506604..4507350 (+)	747	WP_044613513.1	type II secretion system protein N	-
AAHX02_RS22035 (AAHX02_22020)	pilD	4507347..4508147 (+)	801	WP_023322076.1	A24 family peptidase	Machinery gene
AAHX02_RS22040 (AAHX02_22025)	hrpB	4508194..4510623 (-)	2430	WP_032732528.1	ATP-dependent helicase HrpB	-
AAHX02_RS22045 (AAHX02_22030)	thpR	4510696..4511232 (+)	537	WP_008807387.1	RNA 2',3'-cyclic phosphodiesterase	-
AAHX02_RS22050 (AAHX02_22035)	sfsA	4511232..4511948 (+)	717	WP_022066362.1	DNA/RNA nuclease SfsA	-
AAHX02_RS22055 (AAHX02_22040)	dksA	4512111..4512566 (+)	456	WP_007749299.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29445.19 Da
• Isoelectric Point: 8.7151

>NTDB_id=989755 AAHX02_RS22035 WP_023322076.1 4507347..4508147(+) (pilD) [Klebsiella variicola subsp. variicola strain NK_H21_080]
MTILTALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLLLLSFLLMLARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASACGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=989755 AAHX02_RS22035 WP_023322076.1 4507347..4508147(+) (pilD) [Klebsiella variicola subsp. variicola strain NK_H21_080]
ATGACGATATTAACGGCATTATCGCTGCACTTTCCCCTTGTCTGGTATGGCTTCCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCCTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGCTGCTGCTCTCGTTCCTGCTGATGCTGGCGC
GGATTGACGCCCGGACCCAGCTGTTGCCCGACCGTCTGACGCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGACGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCCTCGGCCTGCGGGCTGGTGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGAGGGGGCATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.455	100	0.47
pilD	Acinetobacter nosocomialis M2	45.627	98.872	0.451
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425