Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   AAHI06_RS05085 Genome accession   NZ_CP152477
Coordinates   1139917..1140357 (-) Length   146 a.a.
NCBI ID   WP_347170305.1    Uniprot ID   -
Organism   Pseudomonas salmasensis strain POE54     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1134917..1145357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHI06_RS05045 (AAHI06_05045) - 1134934..1135564 (-) 631 Protein_986 DUF1780 domain-containing protein -
  AAHI06_RS05050 (AAHI06_05050) - 1135794..1136195 (+) 402 WP_032900407.1 GIY-YIG nuclease family protein -
  AAHI06_RS05055 (AAHI06_05055) - 1136298..1136924 (+) 627 WP_347170302.1 hypothetical protein -
  AAHI06_RS05060 (AAHI06_05060) - 1137008..1137925 (+) 918 WP_347170303.1 hypothetical protein -
  AAHI06_RS05065 (AAHI06_05065) - 1138134..1138823 (+) 690 WP_347170304.1 energy-coupling factor ABC transporter permease -
  AAHI06_RS05070 (AAHI06_05070) - 1138888..1139103 (+) 216 WP_003171680.1 hypothetical protein -
  AAHI06_RS05075 (AAHI06_05075) yacG 1139100..1139300 (-) 201 WP_122489563.1 DNA gyrase inhibitor YacG -
  AAHI06_RS05080 (AAHI06_05080) coaE 1139297..1139920 (-) 624 WP_186608209.1 dephospho-CoA kinase -
  AAHI06_RS05085 (AAHI06_05085) pilD 1139917..1140357 (-) 441 WP_347170305.1 A24 family peptidase Machinery gene
  AAHI06_RS05090 (AAHI06_05090) - 1140344..1140742 (-) 399 WP_347171090.1 prepilin peptidase -
  AAHI06_RS05095 (AAHI06_05095) - 1140781..1141990 (-) 1210 Protein_996 type II secretion system F family protein -
  AAHI06_RS05100 (AAHI06_05100) - 1142192..1142605 (+) 414 WP_186608206.1 pilin -
  AAHI06_RS05110 (AAHI06_05110) - 1142895..1143200 (+) 306 WP_057710775.1 DUF6388 family protein -
  AAHI06_RS05115 (AAHI06_05115) nadC 1143320..1144168 (-) 849 WP_347170306.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15988.28 Da        Isoelectric Point: 6.4428

>NTDB_id=989630 AAHI06_RS05085 WP_347170305.1 1139917..1140357(-) (pilD) [Pseudomonas salmasensis strain POE54]
MSLIDLDHQLLPDVLVLPLLWLGLILNSADLLTPLPDAVWGTVLGYMSLWSLFWLFKLATGKDGMGHGDFKLLALLGAWG
GWQILPMTLLMASLLGVFVGLILLRLRKAQVSAPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide


Download         Length: 441 bp        

>NTDB_id=989630 AAHI06_RS05085 WP_347170305.1 1139917..1140357(-) (pilD) [Pseudomonas salmasensis strain POE54]
ATGAGCCTGATTGATCTGGACCACCAGCTGCTACCGGACGTGCTGGTGCTGCCGCTGCTATGGCTGGGGCTGATCCTCAA
CAGTGCTGACCTGCTGACGCCACTGCCCGATGCGGTGTGGGGCACGGTACTCGGCTACATGAGCTTGTGGAGCCTGTTCT
GGCTGTTCAAGCTGGCCACCGGCAAAGACGGCATGGGCCACGGCGACTTCAAGTTACTGGCCTTGCTGGGAGCCTGGGGC
GGCTGGCAGATTCTGCCGATGACCCTGCTGATGGCCTCGCTGCTGGGCGTGTTTGTTGGGTTGATTCTGTTGCGTTTGCG
TAAGGCCCAGGTGTCAGCGCCAATGCCGTTTGGCCCCTGCCTGGCAATTGCCGGCTGGATTGCATTGCTCTGGGGTGGTC
AAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(1-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

56.338

97.26

0.548
  pilD Vibrio campbellii strain DS40M4

55.944

97.945

0.548
  pilD Acinetobacter baumannii D1279779

52.143

95.89

0.5
  pilD Acinetobacter nosocomialis M2

52.143

95.89

0.5
  pilD Neisseria gonorrhoeae MS11

50.394

86.986

0.438

Multiple sequence alignment