Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AAHB66_RS07890 Genome accession   NZ_CP152474
Coordinates   1679098..1679724 (+) Length   208 a.a.
NCBI ID   WP_347115785.1    Uniprot ID   -
Organism   Leclercia sp. S52     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1674098..1684724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHB66_RS07870 (AAHB66_07870) - 1674489..1676249 (-) 1761 WP_347115782.1 Lon protease family protein -
  AAHB66_RS07875 (AAHB66_07875) matP 1676436..1676891 (+) 456 WP_347115783.1 macrodomain Ter protein MatP -
  AAHB66_RS07880 (AAHB66_07880) ompA 1676959..1678014 (-) 1056 WP_347115784.1 porin OmpA -
  AAHB66_RS07885 (AAHB66_07885) sulA 1678368..1678880 (-) 513 WP_347116444.1 SOS-induced cell division inhibitor SulA -
  AAHB66_RS07890 (AAHB66_07890) sxy/tfoX 1679098..1679724 (+) 627 WP_347115785.1 TfoX/Sxy family DNA transformation protein Regulator
  AAHB66_RS07895 (AAHB66_07895) yccS 1679709..1681844 (-) 2136 WP_347115786.1 YccS family putative transporter -
  AAHB66_RS07900 (AAHB66_07900) - 1681863..1682309 (-) 447 WP_347115787.1 YccF domain-containing protein -
  AAHB66_RS07905 (AAHB66_07905) helD 1682433..1684488 (+) 2056 Protein_1540 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24096.55 Da        Isoelectric Point: 8.5939

>NTDB_id=989592 AAHB66_RS07890 WP_347115785.1 1679098..1679724(+) (sxy/tfoX) [Leclercia sp. S52]
MKKLSYERIYQSTKYLSSLGDVEHRALFGGYTLAVDDAVFAMVSEGELYLRACEESAQYCVKNASSYLTLVKRGRAVLLN
YYRVDEALWQDRDKLLQLSSFALEAARRERRERYKRDRLKDLPNLTFQLEILLNEAGISNEEALRTLGAEKCWLKIRELN
KHLSYKVLFALEGAIVGLHEAALPENRRRELVEWYKRLPVDNSTHSGS

Nucleotide


Download         Length: 627 bp        

>NTDB_id=989592 AAHB66_RS07890 WP_347115785.1 1679098..1679724(+) (sxy/tfoX) [Leclercia sp. S52]
ATGAAAAAGTTATCCTATGAGCGGATCTATCAATCTACGAAATATCTTTCATCACTCGGTGATGTTGAGCATCGGGCCCT
GTTCGGCGGATACACCCTGGCGGTGGATGATGCGGTCTTTGCGATGGTCTCAGAGGGGGAGTTATACCTGCGCGCCTGTG
AAGAGAGCGCACAGTACTGCGTCAAAAATGCCTCCTCTTACTTAACGCTGGTGAAGCGGGGGCGCGCGGTATTGCTGAAC
TATTACCGTGTCGATGAGGCGCTCTGGCAGGATCGGGATAAGCTCCTGCAGCTCTCCTCATTTGCCCTCGAAGCCGCGCG
GCGGGAGCGCCGCGAGCGGTACAAGCGCGACAGGCTGAAAGATTTACCCAATCTCACCTTTCAGCTTGAGATCCTGCTAA
ACGAGGCGGGCATCAGCAACGAAGAGGCGTTACGCACCCTCGGCGCCGAGAAGTGCTGGCTGAAGATCAGGGAACTTAAC
AAGCACCTGAGCTACAAGGTGCTGTTTGCGCTGGAAGGGGCAATCGTCGGTCTGCACGAGGCGGCGCTCCCGGAGAACAG
ACGCCGGGAGCTGGTGGAGTGGTACAAAAGGCTGCCGGTGGATAACAGCACTCACTCTGGCAGTTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(15-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

60.309

93.269

0.562

Multiple sequence alignment