Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   HMPREF9425_RS02825 Genome accession   NZ_GL831112
Coordinates   532877..534181 (+) Length   434 a.a.
NCBI ID   WP_003096608.1    Uniprot ID   A0ABN0CHU2
Organism   Streptococcus vestibularis ATCC 49124     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 527877..539181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9425_RS02795 (HMPREF9425_0582) - 528222..529151 (+) 930 WP_003096596.1 ATP-binding cassette domain-containing protein -
  HMPREF9425_RS02800 (HMPREF9425_0583) - 529202..529987 (-) 786 WP_037621376.1 hypothetical protein -
  HMPREF9425_RS02805 (HMPREF9425_0584) - 529999..530697 (-) 699 WP_003096604.1 ABC transporter ATP-binding protein -
  HMPREF9425_RS02810 (HMPREF9425_0585) - 530702..531079 (-) 378 WP_003096605.1 GntR family transcriptional regulator -
  HMPREF9425_RS02815 (HMPREF9425_0586) - 531261..532055 (+) 795 WP_003096606.1 Cof-type HAD-IIB family hydrolase -
  HMPREF9425_RS02820 (HMPREF9425_0587) - 532048..532866 (+) 819 WP_003096607.1 Cof-type HAD-IIB family hydrolase -
  HMPREF9425_RS02825 (HMPREF9425_0588) pilA 532877..534181 (+) 1305 WP_003096608.1 signal recognition particle-docking protein FtsY Machinery gene
  HMPREF9425_RS02830 (HMPREF9425_0589) gmk 534402..535031 (+) 630 WP_003094729.1 guanylate kinase -
  HMPREF9425_RS02835 (HMPREF9425_0590) rpoZ 535053..535367 (+) 315 WP_003093276.1 DNA-directed RNA polymerase subunit omega -
  HMPREF9425_RS02840 (HMPREF9425_0591) priA 535509..537905 (+) 2397 WP_003096610.1 primosomal protein N' Machinery gene
  HMPREF9425_RS02845 (HMPREF9425_0592) fmt 537923..538858 (+) 936 WP_003096612.1 methionyl-tRNA formyltransferase -

Sequence

Protein


Download         Length: 434 a.a.        Molecular weight: 48189.08 Da        Isoelectric Point: 4.2905

>NTDB_id=989502 HMPREF9425_RS02825 WP_003096608.1 532877..534181(+) (pilA) [Streptococcus vestibularis ATCC 49124]
MGLFDRLFGQEENQSQETVANQEFSETEALDNQDLSTSESQAEQLSESETQVEEISSTESVEESESTVTEESQVTVDNHF
ADVMADYYAKKAQVAAAAEKGETVTFEAVQTRKVEEKTEEVQASKTETEQEKYNRTLKKTRTGFAARLNEFFANFRRVDE
EFFEELEEMLILSDVGVNVATQLTEDLRYEARLENVKKTEDLQRLIIEKLVDIYEKDDIYKEHINFQDGLTVMLFVGVNG
VGKTTSIGKLAHKYKQEGKKVMLIAADTFRAGAVAQLVEWGHRVDVPVVTGAEKADPASVVFDGMEKALAEGVDVLMIDT
AGRLQNKDNLMAELEKIGRIIKRVVPEAPHETLLALDASTGQNALSQAKEFSKITPLTGLVLTKLDGSAKGGVVLAIRQE
LDIPVKLIGFGEKIDDIGEFHSEEFMQGLLTGLV

Nucleotide


Download         Length: 1305 bp        

>NTDB_id=989502 HMPREF9425_RS02825 WP_003096608.1 532877..534181(+) (pilA) [Streptococcus vestibularis ATCC 49124]
ATGGGTCTATTTGATCGATTATTTGGACAAGAGGAAAACCAGTCACAAGAAACTGTAGCAAATCAGGAATTTTCAGAAAC
TGAGGCTCTTGATAATCAAGACTTGTCAACAAGTGAAAGTCAAGCAGAACAGCTCAGTGAGTCAGAGACTCAAGTAGAAG
AGATTTCGTCTACAGAATCTGTTGAAGAAAGCGAATCTACAGTGACAGAAGAAAGCCAAGTAACTGTGGATAACCACTTT
GCGGATGTCATGGCTGATTACTATGCTAAAAAGGCTCAGGTAGCTGCTGCTGCAGAAAAAGGTGAAACAGTTACTTTTGA
GGCTGTTCAAACCCGTAAAGTTGAGGAAAAAACTGAAGAAGTTCAGGCTTCAAAAACTGAAACAGAACAAGAAAAATATA
ATCGTACCCTTAAGAAGACGCGTACAGGTTTTGCTGCCCGCCTGAATGAATTCTTTGCGAATTTCCGTCGTGTTGATGAA
GAGTTTTTCGAAGAATTGGAAGAAATGCTGATTCTTTCCGATGTAGGTGTTAATGTTGCAACGCAATTGACAGAAGACTT
ACGCTATGAAGCTCGACTTGAGAATGTCAAAAAGACTGAGGATTTGCAACGCTTGATTATTGAAAAACTTGTGGATATCT
ACGAGAAGGACGATATTTACAAGGAGCATATTAATTTCCAAGATGGTTTGACAGTTATGCTTTTTGTTGGTGTTAATGGG
GTTGGTAAAACGACTTCTATTGGTAAGTTGGCACATAAATACAAACAAGAAGGCAAAAAAGTCATGCTGATTGCTGCAGA
TACCTTCCGTGCGGGAGCTGTTGCCCAATTGGTTGAATGGGGACATCGTGTTGATGTGCCAGTAGTGACTGGTGCTGAAA
AGGCTGACCCTGCTTCAGTGGTTTTTGATGGTATGGAGAAGGCCCTTGCTGAAGGTGTTGATGTTCTTATGATCGATACT
GCGGGTCGTTTACAAAACAAAGACAACCTCATGGCAGAGCTTGAAAAAATCGGCCGTATTATCAAGCGTGTGGTGCCAGA
AGCACCTCATGAAACCCTCTTGGCTTTGGATGCCTCAACAGGTCAAAATGCCCTTAGTCAGGCTAAGGAATTTTCAAAAA
TTACACCTCTTACAGGTCTTGTCTTGACTAAGTTGGATGGTAGTGCCAAGGGTGGTGTGGTTCTAGCCATTCGCCAAGAG
TTGGATATTCCAGTTAAGTTAATTGGTTTTGGTGAGAAAATTGACGACATTGGGGAGTTCCATTCAGAAGAATTCATGCA
AGGTCTCTTGACTGGATTGGTTTAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(146-210)

SRP54-type protein, GTPase domain (SRP54)

(231-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

35.909

100

0.364

Multiple sequence alignment