Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   HMPREF9425_RS01470 Genome accession   NZ_GL831112
Coordinates   277225..280545 (+) Length   1106 a.a.
NCBI ID   WP_037621293.1    Uniprot ID   -
Organism   Streptococcus vestibularis ATCC 49124     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 272225..285545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9425_RS01450 (HMPREF9425_0301) - 273336..273899 (+) 564 WP_003096090.1 hypothetical protein -
  HMPREF9425_RS01455 (HMPREF9425_0302) - 273928..274914 (+) 987 WP_003096093.1 TcaA 3rd/4th domain-containing protein -
  HMPREF9425_RS01460 (HMPREF9425_0303) - 275128..275574 (+) 447 WP_037621291.1 LytTR family DNA-binding domain-containing protein -
  HMPREF9425_RS01465 (HMPREF9425_0304) - 275579..276259 (+) 681 WP_003096097.1 hypothetical protein -
  HMPREF9425_RS10135 (HMPREF9425_0305) - 276663..276809 (+) 147 WP_003096099.1 hypothetical protein -
  HMPREF9425_RS01470 (HMPREF9425_0307) rexB 277225..280545 (+) 3321 WP_037621293.1 ATP-dependent nuclease subunit B Machinery gene
  HMPREF9425_RS01475 (HMPREF9425_0308) rexA 280535..284188 (+) 3654 WP_003096106.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  HMPREF9425_RS01480 (HMPREF9425_0309) - 284592..285323 (-) 732 WP_003096108.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 1106 a.a.        Molecular weight: 126159.80 Da        Isoelectric Point: 4.7826

>NTDB_id=989484 HMPREF9425_RS01470 WP_037621293.1 277225..280545(+) (rexB) [Streptococcus vestibularis ATCC 49124]
MKLLYTDMSQDLTEILTEQATSYAQKGKRVFYIAPNALSFEKERKVLEYLPQSASFEITVTRFTQMARYFILNTSNPKMQ
LDDTGLAMIFYKVLSHMGDDELKVYGRLRKDSNFINQLVDLYKELQQANMTVLDLQHLDQVEKQEDLVRIFSVAQDLLLA
GDFDNQSKLSAFFKEITSGHLDKALGNTVLVIDGFTRFSAEEEALVALLNDKCHQIVIGTYASQKAYRANFVYGNVYQAS
VDFLRTLAQTYKVTPDYVTTDKEGNPSFDRISRLLESRHDFSTVDEQLTAQDKQALQVWEVVNQKEEVAQVAKSIRQLLA
DGKRYKDILVLLGDEESYKLQVGQIFRKFDIPYYFGKEETMSSHPLVQFVDSLERIKRYNYRAEDLLNLVKSGLYGGFAQ
EDLDLFEYYINFADIKGRHKFLSDFTANSRDKYDLDLLNGLRLQMVEPLDKLLNSRKQKGSSLLKKLVVFLEAVQVPSKM
ASLTAKASEAEKEQNEQVWKAFTQLLEQVETIFGEETLSVDDFLSILRSGMLACDYRTVPATIDVVNVKKYDLIQPHSAP
YVFALGMTQSHFPKVGQNKSLLSDEERSRINEATDEHRSLDIVTQSNSQRGHFVAMSLFNAASEQLVLSQPQILNETQDD
MSVYLKELLDLGLPLVEKGRNRFEAKGDQIGNYKDLLSTVIALNSSHLDADLDKETQTFWTVAVRYLRKRLDKDQVLIPN
VIDDVTTTKVDDQVMQLVFPGEEPLKLSASALMTFYNNQYLYFLRYVLGLEELESIHPDARHHGTYLHRVFECVMGDSSS
ENFDDKLEKAIAQTNQEQPFELLYTEDQESRLSRQILEDIARSTASVLRDNAAVKVEREEAKFDLLLANSIKITGIIDRV
DRLTDGALGVVDYKSGKNIFDIQKFYNGLSPQLVTYLEALRQTYKVDADQLFGAMYLHMQDPQLNLAQFGLDKLAAQAHK
ELTYKGLFVASETEHLAGGNYDLQKIVTYDKEDLETLLDYNIKLFTSAAEVIRSGNFAVNPYTEDGKSVQGDQIKAITHF
EADRHMGQARKLLRLPSKGKKEAYLELMAKDEDDNEMQVAETIVPFPVIDQDVTADKKDQEDNHVD

Nucleotide


Download         Length: 3321 bp        

>NTDB_id=989484 HMPREF9425_RS01470 WP_037621293.1 277225..280545(+) (rexB) [Streptococcus vestibularis ATCC 49124]
ATGAAATTACTTTATACGGATATGTCTCAGGATTTGACAGAAATTCTGACGGAGCAGGCAACCAGCTATGCTCAAAAAGG
GAAAAGGGTCTTTTATATTGCCCCTAATGCCCTGTCATTTGAGAAGGAGCGTAAGGTCTTGGAATACCTGCCTCAGTCAG
CATCCTTTGAGATTACGGTGACTCGTTTTACTCAGATGGCGAGATACTTTATTCTCAATACGAGCAACCCCAAGATGCAG
CTGGATGATACAGGTTTGGCCATGATTTTTTATAAGGTGTTGTCGCATATGGGCGATGATGAACTCAAGGTTTATGGCCG
TTTGCGTAAGGATAGCAACTTTATTAATCAATTGGTGGACCTTTATAAAGAGTTGCAGCAGGCTAATATGACGGTTCTGG
ATTTGCAGCATCTGGATCAGGTTGAGAAACAAGAGGATTTGGTCAGGATTTTCAGTGTGGCTCAGGACCTCTTGTTGGCA
GGGGATTTTGACAATCAATCAAAGCTCAGTGCCTTTTTTAAGGAAATTACCTCAGGTCATTTGGATAAGGCCCTGGGCAA
CACGGTTTTGGTCATTGATGGCTTTACGCGTTTTTCTGCCGAGGAGGAGGCTCTGGTTGCACTCTTGAATGATAAGTGCC
ATCAGATTGTCATTGGAACTTATGCCAGTCAAAAAGCTTATAGGGCTAACTTTGTTTATGGCAATGTTTATCAGGCCTCA
GTGGATTTTTTGAGAACTTTGGCTCAAACCTATAAGGTGACACCCGACTATGTAACGACAGACAAAGAGGGCAATCCTTC
TTTTGATCGCATTAGCCGTCTTTTGGAGAGCCGTCATGATTTTAGTACGGTAGATGAGCAGCTGACTGCTCAGGACAAGC
AAGCCTTGCAGGTCTGGGAAGTGGTCAACCAAAAGGAAGAGGTGGCTCAGGTTGCCAAGAGTATTCGTCAGTTGCTGGCA
GATGGCAAGCGCTATAAGGATATTCTGGTCTTACTTGGTGATGAGGAGAGTTATAAGCTTCAGGTAGGGCAGATTTTCCG
AAAATTTGATATTCCCTATTATTTCGGCAAAGAAGAAACCATGTCTAGCCATCCTTTGGTGCAGTTTGTGGATTCGCTGG
AACGTATCAAGCGCTATAACTACCGTGCCGAGGATTTGCTTAATCTCGTAAAATCCGGTCTCTATGGTGGTTTTGCTCAA
GAGGACTTAGATCTTTTTGAGTATTATATCAATTTTGCAGACATCAAGGGGCGTCACAAGTTCTTGTCTGATTTTACGGC
TAATAGTCGTGATAAGTATGATTTAGACCTGCTCAATGGCTTAAGGTTACAGATGGTAGAGCCCTTGGACAAATTGCTTA
ATAGTCGCAAACAAAAGGGATCTAGTCTACTCAAGAAACTAGTGGTCTTTTTAGAGGCTGTGCAAGTGCCAAGTAAGATG
GCTAGTTTGACTGCCAAGGCTAGTGAGGCCGAAAAAGAACAGAATGAACAGGTCTGGAAGGCTTTCACACAACTCTTGGA
GCAGGTTGAGACTATTTTTGGGGAAGAAACACTGTCAGTGGACGACTTTTTGTCCATTTTGCGTTCAGGAATGTTGGCCT
GTGATTACCGTACGGTTCCAGCCACTATCGATGTGGTCAATGTGAAGAAATACGATTTGATTCAACCACATTCTGCTCCT
TATGTTTTTGCCCTGGGGATGACCCAGTCACACTTTCCTAAGGTAGGGCAAAATAAGAGTCTCCTGTCTGACGAGGAACG
TAGTCGTATCAATGAGGCGACGGATGAACACAGGAGTTTGGATATTGTTACGCAGAGCAATAGTCAGCGGGGGCATTTTG
TAGCTATGTCACTTTTTAATGCGGCTAGTGAACAATTGGTGCTTAGTCAGCCACAAATTCTCAATGAGACTCAAGATGAC
ATGTCGGTTTATTTGAAAGAGCTGCTTGACCTTGGTCTTCCTTTGGTTGAAAAGGGACGTAATCGTTTCGAGGCTAAGGG
TGACCAGATTGGGAACTACAAGGACCTTCTATCAACTGTCATTGCCCTTAACAGCAGCCATCTAGATGCTGATTTGGATA
AGGAAACGCAGACTTTCTGGACCGTTGCTGTGCGTTATCTCCGTAAGCGACTTGATAAGGACCAAGTCTTGATTCCAAAT
GTGATTGACGATGTGACGACAACCAAGGTGGATGATCAGGTCATGCAGCTGGTCTTTCCGGGGGAAGAACCACTGAAATT
ATCAGCTTCGGCTCTGATGACCTTCTATAACAACCAATATCTTTATTTTTTGCGTTATGTTTTGGGGCTTGAAGAGTTGG
AGTCCATCCATCCAGATGCTCGACACCACGGGACTTACTTGCACCGTGTCTTTGAGTGTGTTATGGGAGATTCTTCGTCA
GAAAACTTCGATGATAAATTGGAAAAGGCTATTGCTCAGACCAATCAGGAACAGCCCTTTGAACTTCTCTATACAGAGGA
CCAAGAGAGTCGCTTGTCTCGTCAGATTTTGGAAGATATCGCCCGTTCAACTGCCAGTGTTTTACGTGACAATGCGGCCG
TTAAGGTTGAGCGTGAGGAAGCCAAGTTTGATTTGCTTTTAGCAAATAGCATCAAGATTACAGGGATTATTGACCGTGTG
GACCGTTTAACAGATGGGGCTCTGGGTGTCGTTGACTACAAGTCAGGTAAAAATATCTTTGACATTCAAAAATTCTACAA
TGGCCTTAGTCCGCAATTGGTGACCTATCTGGAAGCCCTCCGTCAGACCTATAAGGTTGATGCTGATCAGCTTTTTGGTG
CCATGTATCTTCACATGCAGGACCCACAGCTTAACCTAGCTCAGTTTGGTCTGGATAAGCTAGCAGCTCAGGCTCATAAG
GAATTGACCTATAAGGGACTTTTTGTGGCTTCAGAAACAGAGCATCTAGCTGGTGGAAACTATGATTTGCAAAAGATTGT
CACTTATGACAAGGAGGACCTAGAAACCTTGCTCGATTACAATATTAAGCTCTTTACAAGTGCTGCTGAAGTTATTAGAA
GCGGGAATTTTGCGGTTAATCCTTATACTGAGGATGGCAAGTCTGTTCAAGGAGATCAAATCAAGGCAATTACTCATTTT
GAGGCCGACCGACACATGGGACAGGCTCGAAAACTCTTGCGTTTACCAAGTAAGGGCAAGAAGGAAGCCTATTTGGAGCT
GATGGCAAAAGATGAGGACGATAATGAGATGCAAGTTGCTGAAACTATCGTCCCCTTTCCAGTCATTGATCAAGATGTGA
CAGCAGACAAAAAAGACCAGGAGGACAACCATGTTGACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

43.474

98.373

0.428