Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   HMPREF9425_RS01475 Genome accession   NZ_GL831112
Coordinates   280535..284188 (+) Length   1217 a.a.
NCBI ID   WP_003096106.1    Uniprot ID   A0ABP2KMW7
Organism   Streptococcus vestibularis ATCC 49124     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 275535..289188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9425_RS01465 (HMPREF9425_0304) - 275579..276259 (+) 681 WP_003096097.1 hypothetical protein -
  HMPREF9425_RS10135 (HMPREF9425_0305) - 276663..276809 (+) 147 WP_003096099.1 hypothetical protein -
  HMPREF9425_RS01470 (HMPREF9425_0307) rexB 277225..280545 (+) 3321 WP_037621293.1 ATP-dependent nuclease subunit B Machinery gene
  HMPREF9425_RS01475 (HMPREF9425_0308) rexA 280535..284188 (+) 3654 WP_003096106.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  HMPREF9425_RS01480 (HMPREF9425_0309) - 284592..285323 (-) 732 WP_003096108.1 DUF554 domain-containing protein -
  HMPREF9425_RS01485 (HMPREF9425_0310) - 285598..286329 (+) 732 WP_003096109.1 ABC transporter ATP-binding protein -
  HMPREF9425_RS01490 (HMPREF9425_0311) - 286332..287921 (+) 1590 WP_003096110.1 hypothetical protein -
  HMPREF9425_RS01495 (HMPREF9425_0312) proB 288042..288845 (+) 804 WP_003096111.1 glutamate 5-kinase -

Sequence

Protein


Download         Length: 1217 a.a.        Molecular weight: 138209.41 Da        Isoelectric Point: 4.7756

>NTDB_id=989485 HMPREF9425_RS01475 WP_003096106.1 280535..284188(+) (rexA) [Streptococcus vestibularis ATCC 49124]
MLTKAFLSPTEIEERIAQESASDKERKLTPEQIEAIYSNGTNILVSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFT
VKAAGELKERLEKRLTEQLGQAETDEERAFLSDQIAKIGTADIGTMDAFTQKLVNQYGYLLGVSPIFRIMTDPAEQTLMK
NEVYADLFNDYMQGKDAQLFQKLVRNFTGHSKTSKAFRDLVYDVYNFSQATAGPEKWLRQNLLKGQTEAKPEQAKNDLLD
GLKVGLLADFLAFLRDHLGLAQREFAKAKYLNNVSDAISLLEGALANDQTDMEDLLKQLLTLSGGTGLTNMTRPKDEELK
AYKEAYNKTKNEFVAQLREVDTQLTVLEVLTKHNDDILPLLELLQSFVLDFSDQYLQAKIQENAFEFSDIAHFAIRILEE
NPEVAASYRDRYHEVMVDEYQDNSHTQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNGKFQLFLENPDAGKLILL
KENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVAGSEKQREPHPENQTEVLIYNSDEANVTPDEESADQPISSGE
ISLVIKEIIKLHEQGVRFEDITLLAPTRNTYLDLMASFEEHGIPLVPDEYKSSYLESLEVMIMLDTLRAINNPLNDYALV
ALLRSPMFNFNEDDLARIAVQADKGQFYDKLLAAHTKSGLHPEVVTQGLETKLTLLIETLSDWRDYSKWHSLYDLIWKIY
DDRFYYDYVGSLPRAEQRQANLYALALRANAYEKTGFKGLSRFIGMIDKIISSGNDLEEVADLVPKNAVSLMTIHKSKGL
EFKYVFVLQMNRKFIGHSKDGLSGKYIINREKGLGIKYLADLKDQINTNLPKLNVVLETLTFQENRREERRASISEEMRL
LYVAMTRAEKKLYLVGKGSKEKLTQQFGTDVENNRLPVALRDQIATYQDWVMALDTAFMRKDLKFTVRFVEAEELIPEAI
GQVEVQAAVDADDLSNNRQTEEIKRALTVLESVKKLNQLYAPAIDLPSVRTPSQLKTFYEPVMDTEGVDIMDKKEEVQPL
ETATTFELPDFGQKIKVTGAAVGSATHELMQRLILSDTVTLQDLTQALSRVSADDQVKARVQLEKLLGFFDTELGKLILA
NRGKLRREAPFAMLAEDPASKEDFVVRGIIDGYLLLEDRIVLFDYKTDHFTQPGELKERYKGQMSLYAKALSQAYQVDKI
DKYLILLGGKNLEVVEV

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=989485 HMPREF9425_RS01475 WP_003096106.1 280535..284188(+) (rexA) [Streptococcus vestibularis ATCC 49124]
ATGTTGACTAAAGCTTTTTTAAGTCCAACAGAGATTGAGGAACGTATTGCCCAAGAATCAGCTTCTGACAAGGAACGTAA
GTTAACACCAGAACAGATTGAGGCCATTTACAGTAATGGTACTAATATTCTTGTGTCAGCTTCGGCCGGATCAGGGAAAA
CTTTTGTCATGGTTGAGCGTATCCTTGATATGATTGGACGTGGCGTTGGTATTGACCAACTCTTTATCTCAACCTTTACG
GTAAAGGCTGCAGGTGAGTTAAAAGAGCGTCTGGAAAAACGTCTGACAGAGCAGCTTGGACAAGCTGAGACGGATGAAGA
GCGTGCCTTTCTTTCGGACCAGATTGCTAAGATTGGGACAGCTGATATTGGAACCATGGATGCCTTTACTCAGAAATTGG
TCAATCAGTATGGCTATCTCCTGGGTGTGTCACCTATTTTCCGCATCATGACAGATCCTGCCGAGCAGACACTTATGAAA
AATGAGGTTTATGCTGACCTCTTCAACGATTACATGCAAGGAAAGGATGCCCAGCTTTTCCAAAAATTGGTCCGCAATTT
CACTGGACATAGCAAAACTAGTAAGGCCTTCCGTGATTTAGTTTACGATGTCTATAACTTTTCTCAGGCTACTGCAGGTC
CTGAAAAATGGCTACGTCAAAATCTCTTAAAGGGGCAGACGGAGGCCAAGCCAGAACAGGCTAAAAATGATCTTTTAGAC
GGTCTTAAAGTTGGCTTGTTGGCTGATTTCCTAGCTTTCTTAAGAGACCATTTAGGTCTAGCTCAGCGTGAATTTGCCAA
GGCTAAGTATCTGAATAATGTGTCGGATGCCATTAGCCTTCTTGAAGGAGCTCTGGCCAATGACCAAACGGATATGGAGG
ACTTGCTCAAACAACTCTTGACTTTGTCAGGAGGTACTGGTTTGACCAATATGACCCGTCCTAAAGACGAGGAACTCAAG
GCCTACAAGGAAGCTTACAACAAGACCAAAAATGAGTTTGTGGCCCAGTTGCGAGAGGTTGATACCCAACTAACGGTCCT
CGAGGTTTTGACCAAGCATAATGATGACATCCTACCTCTGTTGGAGTTGCTTCAGTCCTTTGTACTTGATTTTTCGGACC
AGTATTTACAGGCCAAGATTCAGGAAAATGCTTTTGAATTCTCGGATATTGCCCATTTTGCCATCCGTATTTTGGAGGAA
AATCCAGAGGTGGCAGCTAGCTACCGTGACCGTTACCATGAAGTAATGGTAGATGAGTATCAGGACAATAGCCATACCCA
AGAACGCATGTTGGAACTCCTATCTAATGGACACAACCGATTCATGGTGGGAGATATCAAGCAATCCATCTATCGTTTCC
GTCAGGCAGACCCTCAGATTTTTAATGGTAAGTTCCAGCTTTTCCTTGAAAATCCAGATGCAGGTAAACTTATCCTTCTA
AAGGAGAACTTCCGTAGTCAATCTGAAGTTCTTGATGCGACTAATGGTGTTTTCAGCCACCTCATGGATCAGGAAATCGG
GGACATCCTCTATGACAAGACTCATATGTTGGTAGCAGGTAGCGAGAAGCAAAGAGAGCCCCATCCTGAAAATCAGACAG
AGGTTCTGATTTATAATAGTGATGAAGCAAATGTGACTCCCGACGAGGAAAGTGCTGATCAACCTATCAGTAGCGGCGAG
ATTTCCTTGGTTATCAAAGAAATCATCAAACTTCACGAGCAGGGTGTACGTTTTGAGGACATTACCCTCCTTGCGCCAAC
CCGCAACACCTATCTGGACTTGATGGCAAGCTTTGAGGAGCACGGAATTCCTTTGGTTCCTGACGAGTACAAGTCAAGTT
ACCTTGAGTCACTAGAAGTTATGATTATGTTGGATACTCTTCGTGCCATCAATAATCCTCTCAATGACTACGCCTTGGTT
GCTCTCCTTCGTTCACCGATGTTTAACTTCAACGAGGACGACCTGGCTAGGATTGCTGTCCAGGCTGACAAAGGCCAATT
CTACGATAAGCTTCTTGCAGCTCATACTAAATCAGGACTTCATCCAGAAGTTGTCACCCAAGGACTTGAGACCAAGTTGA
CTCTCTTAATTGAGACTCTATCAGATTGGCGTGATTACAGTAAGTGGCACTCGCTCTATGACCTCATCTGGAAGATTTAC
GACGATCGTTTCTATTATGATTATGTTGGCAGCCTTCCACGAGCTGAGCAACGCCAGGCCAATCTCTACGCCCTTGCCTT
GCGTGCCAATGCCTATGAAAAGACTGGCTTTAAGGGGCTTTCTCGTTTTATTGGTATGATTGATAAGATTATTTCTAGCG
GTAACGACCTAGAGGAAGTGGCAGACTTGGTTCCCAAAAATGCCGTTAGCCTCATGACCATTCACAAGTCCAAGGGGCTA
GAGTTTAAGTATGTCTTTGTCCTTCAGATGAATCGCAAGTTCATTGGTCACAGCAAGGATGGCCTGAGCGGGAAGTATAT
TATCAACCGTGAAAAAGGGCTTGGCATTAAGTACCTAGCTGACCTTAAAGACCAGATAAACACCAATTTGCCTAAGTTAA
ATGTTGTTCTCGAGACCTTAACCTTCCAGGAAAATCGTAGGGAAGAGCGACGGGCAAGTATCTCAGAAGAGATGCGTCTA
CTCTATGTGGCAATGACCCGTGCAGAGAAAAAACTCTACCTGGTTGGTAAGGGCAGTAAGGAGAAATTGACCCAGCAATT
TGGCACGGATGTTGAAAATAATCGCCTACCAGTAGCCCTACGTGACCAAATCGCTACTTATCAGGATTGGGTTATGGCTT
TGGATACTGCCTTTATGAGAAAGGATCTCAAGTTTACTGTTCGCTTTGTTGAGGCTGAGGAGTTGATCCCAGAGGCTATT
GGTCAGGTTGAAGTTCAAGCGGCAGTAGATGCCGATGATTTATCTAACAATCGTCAGACAGAAGAGATTAAGCGTGCCCT
GACTGTCTTAGAAAGTGTTAAAAAACTCAACCAACTCTATGCACCAGCGATTGACCTACCATCGGTGCGTACTCCAAGTC
AGCTGAAGACTTTCTACGAACCAGTTATGGATACAGAAGGTGTAGATATCATGGACAAGAAAGAGGAAGTCCAACCTCTT
GAGACAGCAACCACTTTTGAGTTACCAGACTTTGGACAAAAGATTAAGGTAACCGGAGCTGCGGTTGGTTCTGCTACCCA
TGAACTCATGCAACGCTTGATTCTTTCTGATACTGTGACCCTCCAAGACTTGACACAGGCCTTGAGTCGGGTATCGGCAG
ATGATCAAGTTAAGGCGCGTGTGCAGTTAGAAAAGCTACTAGGCTTCTTTGACACCGAACTTGGGAAGCTCATTCTAGCT
AACCGTGGTAAGTTGCGTCGTGAAGCACCATTTGCTATGTTAGCAGAAGATCCCGCTAGTAAAGAAGACTTTGTCGTCCG
TGGTATCATCGATGGCTACCTTCTTCTTGAAGACCGTATTGTCCTCTTTGATTACAAGACGGACCATTTTACTCAACCTG
GTGAGCTTAAGGAACGCTACAAAGGGCAAATGAGCCTATATGCTAAAGCACTTAGCCAAGCCTATCAAGTAGATAAGATT
GATAAATACCTTATTCTCCTAGGTGGAAAAAACTTGGAAGTTGTAGAAGTATAA

Domains

Predicted by InterProScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(28-464)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1060-1196)

UvrD-like helicase C-terminal domain (UvrD_C)

(478-894)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

50.204

100

0.505

Multiple sequence alignment