Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   R8570_RS10940 Genome accession   NZ_AP026932
Coordinates   1809936..1810967 (-) Length   343 a.a.
NCBI ID   WP_050220262.1    Uniprot ID   A0A4J2FPJ7
Organism   Streptococcus pneumoniae strain PZ900701549     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1804936..1815967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8570_RS09140 (PC1528_18140) - 1805039..1805800 (-) 762 WP_001107757.1 SDR family oxidoreductase -
  R8570_RS09145 (PC1528_18150) ytpR 1805833..1806462 (-) 630 WP_000578314.1 YtpR family tRNA-binding protein -
  R8570_RS09150 (PC1528_18160) - 1806478..1806795 (-) 318 WP_000615767.1 thioredoxin family protein -
  R8570_RS09155 (PC1528_18170) - 1806792..1807091 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  R8570_RS09160 - 1807329..1807391 (-) 63 WP_219300018.1 hypothetical protein -
  R8570_RS09165 (PC1528_18180) - 1807416..1807607 (-) 192 WP_000291826.1 cell wall-binding protein -
  R8570_RS09170 (PC1528_18190) - 1807768..1808442 (-) 675 WP_000725742.1 LiaF transmembrane domain-containing protein -
  R8570_RS09175 (PC1528_18200) - 1808448..1808894 (-) 447 WP_050263722.1 LytTR family DNA-binding domain-containing protein -
  R8570_RS09180 - 1809008..1809511 (-) 504 WP_000800947.1 phosphatase PAP2 family protein -
  R8570_RS09185 (PC1528_18210) - 1809508..1809870 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  R8570_RS10940 (PC1528_18220) rcrQ 1809936..1810967 (-) 1032 WP_050220262.1 ABC transporter ATP-binding protein Regulator
  R8570_RS10945 (PC1528_18240) - 1810974..1811795 (-) 822 Protein_1798 ABC transporter permease -
  R8570_RS09195 (PC1528_18250) - 1811812..1812281 (-) 470 Protein_1799 MarR family winged helix-turn-helix transcriptional regulator -
  R8570_RS09200 (PC1528_18260) - 1812405..1813121 (-) 717 WP_050263719.1 YebC/PmpR family DNA-binding transcriptional regulator -
  R8570_RS09205 (PC1528_18270) ply 1814002..1815417 (-) 1416 WP_001284359.1 cholesterol-dependent cytolysin pneumolysin -
  R8570_RS09210 (PC1528_18280) - 1815428..1815838 (-) 411 WP_000595757.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37960.15 Da        Isoelectric Point: 4.4400

>NTDB_id=98945 R8570_RS10940 WP_050220262.1 1809936..1810967(-) (rcrQ) [Streptococcus pneumoniae strain PZ900701549]
MDFLLMGALFIVLPRTMVSAKRINQVLDLHSSIQNPAQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTV
AFIGSIGSGKSTLVNLIPRFYDVSAGEILVDGVNVQDYDFSATAHAGQKVAIVGPTGTGKTTIVNLLMKFYEIDKGSIHI
DGVDTKAMTRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVG
QKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGNYEE
LMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=98945 R8570_RS10940 WP_050220262.1 1809936..1810967(-) (rcrQ) [Streptococcus pneumoniae strain PZ900701549]
ATGGACTTCCTTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTT
AGATTTGCATTCTTCTATCCAAAACCCTGCTCAAGTGCAGCTGACTGATGAAAACTTCAAAGGTCAGGTCGAGTTTAAGG
ATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATGTTAGCTTTAAAGCAGAAACTGGTCAAACAGTG
GCCTTTATTGGGTCAATAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGA
AATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGCGACAGCTCATGCTGGTCAAAAGGTTGCCATTGTTG
GGCCGACTGGGACTGGTAAGACAACCATTGTCAATCTTTTGATGAAATTCTATGAGATTGATAAGGGAAGTATTCACATT
GATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGATACCTGGCTCTT
TGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAGTGATGAACGAATGATGGAAGCTAGTAAGGCTG
TGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCATCTTGGATGACACCGTGACCTTGTCTGTAGGA
CAAAAACAACTATTGACTATTGCTCGTGCCCTTCTTAAGGATGCACCGCTTTTGATTTTGGATGAGGCGACTTCTTCTGT
TGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGATGGAAGGACGCACATCCTTTGTCATTGCCCACC
GCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATGGAAATATCATCGAGCAAGGCAACTATGAGGAA
CTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTTACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(120-265)

ABC transporter (ABC_tran)

(68-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4J2FPJ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

80.804

65.306

0.528
  rcrP Streptococcus mutans UA159

37.5

100

0.376

Multiple sequence alignment