Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   HMPREF9319_RS04525 Genome accession   NZ_GL397128
Coordinates   943050..943712 (-) Length   220 a.a.
NCBI ID   WP_176602258.1    Uniprot ID   -
Organism   Streptococcus equinus ATCC 700338     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 938050..948712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9319_RS04500 (HMPREF9319_0929) - 938282..939385 (+) 1104 WP_003064730.1 hypothetical protein -
  HMPREF9319_RS04505 (HMPREF9319_0930) - 939421..939882 (+) 462 WP_003064731.1 RNase H family protein -
  HMPREF9319_RS04510 (HMPREF9319_0931) xerS 940165..941235 (+) 1071 WP_003064732.1 tyrosine recombinase XerS Machinery gene
  HMPREF9319_RS04515 (HMPREF9319_0932) - 941342..942022 (-) 681 WP_003064733.1 LexA family transcriptional regulator -
  HMPREF9319_RS04520 (HMPREF9319_0933) - 942106..943053 (-) 948 WP_003064734.1 sensor histidine kinase -
  HMPREF9319_RS04525 (HMPREF9319_0934) braR 943050..943712 (-) 663 WP_176602258.1 response regulator transcription factor Regulator
  HMPREF9319_RS04530 (HMPREF9319_0935) - 943800..945779 (-) 1980 WP_003064736.1 FtsX-like permease family protein -
  HMPREF9319_RS04535 (HMPREF9319_0936) - 945781..946533 (-) 753 WP_003064738.1 ABC transporter ATP-binding protein -
  HMPREF9319_RS04545 (HMPREF9319_0938) - 947037..947348 (-) 312 WP_003064742.1 hypothetical protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25471.16 Da        Isoelectric Point: 4.9715

>NTDB_id=989410 HMPREF9319_RS04525 WP_176602258.1 943050..943712(-) (braR) [Streptococcus equinus ATCC 700338]
MKQGKIYIVEDDETIVKLLKQHLSQTYDVFSVTNFRAIKQEVEEIKPDLILIDITLPYFNGFYWTTEIRKSMTLPIIFIS
SSDDEMDTVMALNMGGDDFVSKPFSLTILDAKISAFLRRAYQFTSDNYQLEHFSLSRDGILSNGDDHITLSPTENKILAI
LFEHQNQVIPKEELLEKLWENESFIDQNTLSVNITRLRKKTQPLGFDRIHTVRGVGYLLK

Nucleotide


Download         Length: 663 bp        

>NTDB_id=989410 HMPREF9319_RS04525 WP_176602258.1 943050..943712(-) (braR) [Streptococcus equinus ATCC 700338]
ATGAAACAAGGAAAGATTTATATTGTCGAGGACGATGAAACTATCGTTAAACTTTTAAAACAACATCTTAGTCAAACTTA
TGATGTCTTTAGTGTCACTAATTTTCGAGCTATCAAGCAGGAAGTCGAAGAAATCAAACCTGACCTTATCTTGATTGATA
TCACGTTGCCATATTTTAATGGTTTTTATTGGACAACAGAAATTCGTAAAAGCATGACATTGCCGATTATTTTTATCTCA
TCTAGTGATGATGAAATGGATACTGTCATGGCACTCAATATGGGAGGAGACGATTTTGTGTCAAAGCCATTTTCTCTAAC
GATTTTAGATGCCAAAATTTCAGCTTTTTTAAGACGTGCTTACCAGTTTACCTCAGATAATTACCAATTAGAACATTTTT
CTCTATCACGTGACGGGATTTTGTCAAACGGTGACGACCATATCACTCTATCTCCAACAGAAAATAAGATTTTAGCAATT
CTCTTTGAACATCAAAATCAAGTCATTCCCAAAGAGGAATTACTCGAGAAGCTTTGGGAAAATGAAAGTTTCATTGACCA
AAACACCCTTAGTGTTAACATAACACGACTCCGCAAGAAAACACAACCATTAGGTTTTGATCGTATTCACACCGTGAGAG
GAGTTGGCTACCTTCTAAAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

45.413

99.091

0.45

Multiple sequence alignment