Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   HMPREF9319_RS04510 Genome accession   NZ_GL397128
Coordinates   940165..941235 (+) Length   356 a.a.
NCBI ID   WP_003064732.1    Uniprot ID   A0A1H9NID7
Organism   Streptococcus equinus ATCC 700338     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 935165..946235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9319_RS04490 (HMPREF9319_0927) - 935483..937342 (+) 1860 WP_003064728.1 hypothetical protein -
  HMPREF9319_RS04495 (HMPREF9319_0928) - 937365..938285 (+) 921 WP_003064729.1 ATP-binding protein -
  HMPREF9319_RS04500 (HMPREF9319_0929) - 938282..939385 (+) 1104 WP_003064730.1 hypothetical protein -
  HMPREF9319_RS04505 (HMPREF9319_0930) - 939421..939882 (+) 462 WP_003064731.1 RNase H family protein -
  HMPREF9319_RS04510 (HMPREF9319_0931) xerS 940165..941235 (+) 1071 WP_003064732.1 tyrosine recombinase XerS Machinery gene
  HMPREF9319_RS04515 (HMPREF9319_0932) - 941342..942022 (-) 681 WP_003064733.1 LexA family transcriptional regulator -
  HMPREF9319_RS04520 (HMPREF9319_0933) - 942106..943053 (-) 948 WP_003064734.1 sensor histidine kinase -
  HMPREF9319_RS04525 (HMPREF9319_0934) braR 943050..943712 (-) 663 WP_176602258.1 response regulator transcription factor Regulator
  HMPREF9319_RS04530 (HMPREF9319_0935) - 943800..945779 (-) 1980 WP_003064736.1 FtsX-like permease family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41334.41 Da        Isoelectric Point: 9.4174

>NTDB_id=989409 HMPREF9319_RS04510 WP_003064732.1 940165..941235(+) (xerS) [Streptococcus equinus ATCC 700338]
MKREKLLEKIDELKEIMPWYVLDYYQSKLSVPYSFTTLYEYLKEYRRFFEWLLDSGISDVTKIADVELTTLEHLSKKDME
SFILYLRERPSLNTYSTKQGVSQTTINRTLSALSSLFKYLTEEVEDENGEPYFYRNVMKKIATKKKKETLAARAENIKGK
LFLGDETMAFIDYIDTEYQNKLSHRALSSFQKNKERDLALIALLLASGVRLSEAVNLDLKDLNLNMMVIEVTRKGGKRDS
VNVANFAKPYLEAYLQIRAPRYKAEKQDQALFLTEYRGVPNRIDASSVEKLVAKYSQDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=989409 HMPREF9319_RS04510 WP_003064732.1 940165..941235(+) (xerS) [Streptococcus equinus ATCC 700338]
ATGAAACGTGAAAAATTACTTGAAAAAATTGATGAACTTAAAGAAATAATGCCTTGGTACGTCTTGGACTATTACCAATC
AAAACTTTCAGTTCCTTATAGCTTCACAACTTTATATGAATACTTAAAAGAATATCGCCGATTTTTCGAATGGCTTTTGG
ATTCTGGAATTTCAGATGTTACTAAAATTGCTGATGTTGAGTTAACAACCCTGGAACATCTTTCTAAAAAAGACATGGAA
TCATTCATCCTTTATCTGCGTGAACGTCCTTCTTTGAACACTTATTCAACAAAACAAGGTGTCTCACAAACAACGATTAA
TCGGACGTTATCAGCACTTTCAAGTCTGTTTAAATACCTAACAGAAGAGGTCGAAGATGAAAATGGTGAGCCCTACTTCT
ATCGAAATGTCATGAAAAAAATCGCTACTAAGAAGAAAAAAGAAACGCTGGCAGCTCGAGCTGAAAATATAAAAGGCAAA
CTTTTCCTAGGTGACGAGACCATGGCATTTATCGACTATATCGATACAGAGTATCAAAATAAGCTCTCTCACCGCGCCCT
CTCCTCCTTCCAAAAGAATAAGGAGCGTGATTTAGCGCTTATTGCTCTTCTGCTTGCCTCTGGTGTCCGTCTTTCAGAAG
CTGTTAATCTTGATTTGAAAGACTTAAACCTTAATATGATGGTTATCGAAGTCACTCGTAAAGGTGGAAAACGTGATTCT
GTCAATGTTGCTAACTTTGCTAAGCCTTATTTAGAAGCTTATTTACAAATCAGAGCGCCTCGCTATAAGGCGGAAAAACA
AGACCAAGCTCTCTTTTTAACAGAATATCGCGGTGTTCCTAACCGTATTGATGCTTCAAGCGTTGAAAAGTTAGTTGCTA
AATACTCTCAAGATTTCAAAGTTCGTGTAACACCCCATAAACTGCGCCACACACTTGCAACACGTCTTTACGATGCTACT
AAATCACAAGTCCTAGTTAGCCACCAATTAGGACATGCCAGCACACAAGTTACCGACTTATACACCCATATCGTCAACGA
CGAACAAAAAAATGCTTTAGATAAGCTTTAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(191-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H9NID7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.427

100

0.834