Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   AAG068_RS20950 Genome accession   NZ_CP152427
Coordinates   4066096..4066890 (-) Length   264 a.a.
NCBI ID   WP_003161566.1    Uniprot ID   P52928
Organism   Bacillus paramycoides strain JYZ-SD5     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 4061096..4071890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG068_RS20915 (AAG068_20915) - 4062658..4062891 (+) 234 WP_098667350.1 DUF2627 domain-containing protein -
  AAG068_RS20920 (AAG068_20920) - 4062941..4063669 (-) 729 WP_342715692.1 glycerophosphodiester phosphodiesterase -
  AAG068_RS20925 (AAG068_20925) - 4063720..4063866 (+) 147 WP_001247671.1 YycC family protein -
  AAG068_RS20930 (AAG068_20930) - 4063950..4064402 (-) 453 WP_342715694.1 YrhA family protein -
  AAG068_RS20935 (AAG068_20935) - 4064542..4065111 (-) 570 WP_342715695.1 DUF1629 domain-containing protein -
  AAG068_RS20940 (AAG068_20940) - 4065225..4065668 (-) 444 WP_342715696.1 AHH domain-containing protein -
  AAG068_RS20945 (AAG068_20945) - 4065643..4065819 (-) 177 WP_342715697.1 hypothetical protein -
  AAG068_RS20950 (AAG068_20950) spo0A 4066096..4066890 (-) 795 WP_003161566.1 sporulation transcription factor Spo0A Regulator
  AAG068_RS20955 (AAG068_20955) spoIVB 4067178..4068476 (-) 1299 WP_342715698.1 SpoIVB peptidase -
  AAG068_RS20960 (AAG068_20960) recN 4068595..4070334 (-) 1740 WP_342715699.1 DNA repair protein RecN Machinery gene
  AAG068_RS20965 (AAG068_20965) argR 4070602..4071051 (-) 450 WP_001032581.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29440.17 Da        Isoelectric Point: 7.4718

>NTDB_id=989328 AAG068_RS20950 WP_003161566.1 4066096..4066890(-) (spo0A) [Bacillus paramycoides strain JYZ-SD5]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLKDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANATIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=989328 AAG068_RS20950 WP_003161566.1 4066096..4066890(-) (spo0A) [Bacillus paramycoides strain JYZ-SD5]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTAGTATCAATGCTAGAGAGTTATGTAGCTGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAATTTATTAAAAGATAAACAGCCGGATGTACTCG
TATTAGATATTATTATGCCACATTTAGATGGTTTAGCTGTACTAGAGAAAATGCGACATATCGAAAGGTTAAGACAGCCT
AGCGTAATCATGTTGACAGCATTTGGACAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCTTCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTGAGCGGTAAAGCGAACGCTACTATTAAACGTCCAC
TGCCATCTTTCCGATCAGCAACAACAGTAGATGGAAAACCGAAAAACTTAGACGCGAGCATTACGAGTATCATTCATGAA
ATTGGTGTGCCTGCTCATATTAAAGGGTACATGTACTTAAGGGAAGCAATTTCTATGGTGTACAATGACATCGAATTACT
TGGATCTATTACGAAAGTATTGTATCCAGATATCGCGAAGAAATATAATACAACAGCAAGCCGCGTTGAACGCGCAATCC
GTCACGCAATTGAAGTAGCATGGAGTCGTGGGAATATCGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAATTCCGAGTTCATCGCAATGGTTGCGGATAAGCTGAGACTTGAACATAAGGCTTCGTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P52928

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818

Multiple sequence alignment