Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AAG068_RS20960 Genome accession   NZ_CP152427
Coordinates   4068595..4070334 (-) Length   579 a.a.
NCBI ID   WP_342715699.1    Uniprot ID   -
Organism   Bacillus paramycoides strain JYZ-SD5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4063595..4075334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG068_RS20925 (AAG068_20925) - 4063720..4063866 (+) 147 WP_001247671.1 YycC family protein -
  AAG068_RS20930 (AAG068_20930) - 4063950..4064402 (-) 453 WP_342715694.1 YrhA family protein -
  AAG068_RS20935 (AAG068_20935) - 4064542..4065111 (-) 570 WP_342715695.1 DUF1629 domain-containing protein -
  AAG068_RS20940 (AAG068_20940) - 4065225..4065668 (-) 444 WP_342715696.1 AHH domain-containing protein -
  AAG068_RS20945 (AAG068_20945) - 4065643..4065819 (-) 177 WP_342715697.1 hypothetical protein -
  AAG068_RS20950 (AAG068_20950) spo0A 4066096..4066890 (-) 795 WP_003161566.1 sporulation transcription factor Spo0A Regulator
  AAG068_RS20955 (AAG068_20955) spoIVB 4067178..4068476 (-) 1299 WP_342715698.1 SpoIVB peptidase -
  AAG068_RS20960 (AAG068_20960) recN 4068595..4070334 (-) 1740 WP_342715699.1 DNA repair protein RecN Machinery gene
  AAG068_RS20965 (AAG068_20965) argR 4070602..4071051 (-) 450 WP_001032581.1 arginine repressor ArgR -
  AAG068_RS20970 (AAG068_20970) - 4071194..4072033 (-) 840 WP_342715700.1 TlyA family RNA methyltransferase -
  AAG068_RS20975 (AAG068_20975) dxs 4072037..4073929 (-) 1893 WP_342715701.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AAG068_RS20980 (AAG068_20980) ispA 4074232..4075122 (-) 891 WP_342715702.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65807.93 Da        Isoelectric Point: 4.8627

>NTDB_id=989329 AAG068_RS20960 WP_342715699.1 4068595..4070334(-) (recN) [Bacillus paramycoides strain JYZ-SD5]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSVLKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGERIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENELTEERLKISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=989329 AAG068_RS20960 WP_342715699.1 4068595..4070334(-) (recN) [Bacillus paramycoides strain JYZ-SD5]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGATTAACGGTTTT
AAGTGGTGAAACAGGAGCCGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGTCGTGGTTCAGCCGAAT
TCGTTCGATACGGGACGGAAAAAGCTGAGATAGAGGGGCTATTTTATGTAGAAGATGATAAGCATCCATGTATTGAAAAG
GCAGAAGAGTTGGACATAGAAATAGAAGACGGCATGATTATTTTGAAGCGTGATATCGCTGCAAACGGAAAAAGTGTATG
TCGTGTAAATGGGAAATTAGTTACTCTTAGTGTATTAAAAGAAATTGGAAAAACACTTGTTGATATTCATGGACAGCACG
AAACGCAAGATTTAATGAATGAAGAGCGTCATTTATTTATGCTCGATCATTTTGATGGAGAGCGTATTGTTAAACAATTG
GATATATATCAAAATGTATACGCTGATTATGAGAAGTTAAAAAAACAGTTAAAATCGTTAAGTGAAAATGAACAACAAAT
GGCGCATCGCTTAGATTTAATTCAATTCCAGCATGAAGAAATCCGTAAGGCGGATTTAAAGATGGATGAAGAAAATGAAT
TGACTGAAGAACGCTTGAAAATTTCTAATTTCGAAAAAATTTATAAAGCATTAGGCGATGCATATCGCTCGTTAAGCGCG
GACGGACAAGGATTAGATAATGTAAGAAGCGCAATGGGACAAATGGAGAGTATTACACATTTAGATGAAGTGTATCAAGA
AAATCATGACTCAATTGCAAATAGCTATTACTTATTAGAAGAAGTTGCGTATCAACTGAGAGAAAAGCTCGATATGATGG
AATATGATCCGAATCGTTTAGACGAAATTGAAACGCGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAGCAGTTAAAGGAATTAGAAAGTGTGATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAGCTTG
CAGAGCATCTTACAAATGCCATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACAAAATTTGAAGTGAGAATTATG
AAGAGAGAAGGAAATGCTGAAGAGCCTCTTGTGGAGGGAGCGCCAGTAAGACTTACGGCGGATGGCTATGACCATGTGGA
ATTTTATATTTCAACAAATCCAGGTGAGCCGTTAAAGCCACTTTCAAAGGTCGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGTATTTTTTCTAAGCATCAAGGTGTTGCATCTGTAATTTTTGATGAGGTGGATACTGGTGTAAGT
GGTCGAGTTGCACAGGCTATTGCAGAAAAAATTTATCGAGTATCAGTAAACTCACAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCGCATTTATTTATTCGAAAACAAGTAGCGAATGATCGAACAATTACGTCAGTTACGG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAATTACTCACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.931

100

0.599

Multiple sequence alignment