Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AAG068_RS06090 Genome accession   NZ_CP152427
Coordinates   1182300..1184126 (+) Length   608 a.a.
NCBI ID   WP_342718551.1    Uniprot ID   -
Organism   Bacillus paramycoides strain JYZ-SD5     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1177300..1189126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG068_RS06070 (AAG068_06070) - 1177607..1178281 (-) 675 WP_342718548.1 TerC family protein -
  AAG068_RS06075 (AAG068_06075) mecA 1178624..1179307 (+) 684 WP_000350711.1 adaptor protein MecA Regulator
  AAG068_RS06080 (AAG068_06080) - 1179380..1180924 (+) 1545 WP_342718549.1 cardiolipin synthase -
  AAG068_RS06085 (AAG068_06085) - 1181005..1182249 (+) 1245 WP_342718550.1 competence protein CoiA family protein -
  AAG068_RS06090 (AAG068_06090) pepF 1182300..1184126 (+) 1827 WP_342718551.1 oligoendopeptidase F Regulator
  AAG068_RS06095 (AAG068_06095) - 1184244..1184417 (-) 174 WP_000754593.1 hypothetical protein -
  AAG068_RS06100 (AAG068_06100) - 1184647..1185540 (-) 894 WP_342718552.1 ClpXP adapter SpxH family protein -
  AAG068_RS06105 (AAG068_06105) - 1185540..1185938 (-) 399 WP_342718553.1 globin -
  AAG068_RS06110 (AAG068_06110) - 1186120..1186698 (-) 579 WP_342718554.1 CYTH domain-containing protein -
  AAG068_RS06115 (AAG068_06115) - 1186843..1187214 (+) 372 WP_097997951.1 hypothetical protein -
  AAG068_RS06120 (AAG068_06120) - 1187245..1187883 (+) 639 WP_306184986.1 GTP pyrophosphokinase family protein -
  AAG068_RS06125 (AAG068_06125) - 1187902..1188699 (+) 798 WP_212956437.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70265.52 Da        Isoelectric Point: 4.6201

>NTDB_id=989316 AAG068_RS06090 WP_342718551.1 1182300..1184126(+) (pepF) [Bacillus paramycoides strain JYZ-SD5]
MSEQNTAKALPDRNEIEESSTWRLEDIFQTDAEWEKEFQAIKELLPKLTEFKGKLGDSANNLLEALQYEDEVSMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLKENRDLSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSASSNTFGMLNNADLKFPSIKGEDGEEIEITHGRYIQFLESDDRRVREDAFKAVYETYGKYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVESVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDMLLKSLNVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKRAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=989316 AAG068_RS06090 WP_342718551.1 1182300..1184126(+) (pepF) [Bacillus paramycoides strain JYZ-SD5]
ATGTCTGAACAAAACACAGCAAAAGCATTACCGGATCGTAACGAGATTGAAGAATCAAGTACGTGGCGATTAGAAGATAT
TTTCCAAACAGATGCAGAATGGGAAAAAGAATTCCAAGCTATTAAAGAGCTATTACCGAAGTTAACTGAATTTAAAGGGA
AACTTGGTGACTCTGCGAACAATTTACTTGAAGCATTGCAATATGAAGATGAAGTTTCAATGCGATTAGGTAAGCTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCGTTAAATGACCGTGCAACAAATTTATA
TTCACAAGTATCTAGTAGCACAGCATATATTGTGCCTGAAATTTTATCGATTTCAGAAGATACACTGCAAACATTCTTGA
AAGAAAATAGAGATTTAAGTGTATATGAACATGCGTTAGAAGAAATTACGCGTCAACGCCCTCACGTATTATCTGAAGCC
GAAGAGGCACTATTAGCAGAAGCATCTGAAGTAATGAGTGCGTCAAGTAATACATTTGGTATGTTGAATAATGCGGATTT
GAAATTCCCATCTATTAAAGGTGAGGATGGAGAAGAAATAGAAATTACACATGGTCGTTACATTCAGTTTTTAGAAAGTG
ATGATCGTCGTGTACGCGAAGATGCGTTCAAAGCTGTATATGAAACGTACGGAAAATATAAGAACACATTTGCAAGTACG
TTAAGTGGAGCTGTGAAGCGTAATAATTTCAATGCGCGCGTTCGTAAATACGATTCTGCACGTCAAGCTGCATTAAGTAA
TAATAATATTCCTGAAGCGGTGTATGATCAACTTGTTGAATCTGTAAATGATAATTTACACTTGCTACATCGTTACATTG
ATATTCGTAAGCGTGCACTAGGACTTGATGAGCTTCATATGTATGATTTATATACACCACTTGTACCAGAAGTGAAAATG
AACGTGAAGTATGAAGAAGCGCAAGACATGTTATTAAAGTCTTTAAACGTACTTGGTGATGAATATGTTGATATTTTGAA
AGAAGCATATGAAAATCGCTGGGTAGATGTGTATGAGAATAAAGGAAAACGAAGCGGAGCATATTCATCTGGTGCATATG
GAACAAATCCGTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCTCATGAATTTGGTCATTCT
GTGCATAGTTACTACACAAGAAAAACGCAGCCGCACGTATACGGTGATTATTCAATCTTCGTTGCGGAAGTAGCATCAAC
TTGTAATGAAGCGCTTCTAAACGATTATTTATTAAAAACGACAGAAGATAAGAAAGAGCGTCTATACTTATTAAATCATT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACGATGTTCGCAGAGTTTGAGCATATTATTCATAAGAAAGTACAA
GAGGGACATGCGGTTACACCAGACATGTTAACGGAGATCTACTATGATTTAAATAAGAAATATTTCGGTGATGCTTTAGT
AATTGATGAAGAAATTGGTTTAGAGTGGTCTCGTATTCCTCACTTCTACTACAACTATTACGTATACCAATACGCAACAG
GATTTAGTGCAGCAACGGCTCTATCTAAACAAATTTTAGAGGAAGGGCAACCAGCAGTAGAACGTTACATTAATGAGTTC
TTAAAAGCAGGAAGCTCAGATTACCCAATTGAAGTGCTGAAAAGAGCAGGAGTAGATATGGCATCTCCAGAACCGGTAAA
AGAAGCATTGCAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCATTATTATTTGAAGAGAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.916

97.533

0.487

Multiple sequence alignment