Detailed information NTG0989189

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ACODQS_RS20120
• Genome accession: NZ_CP184743
• Coordinates: 4109833..4110858 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain LTE0
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4104833..4115858

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACODQS_RS20090 (ACODQS_20090)	zapB	4104917..4105162 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
ACODQS_RS20095 (ACODQS_20095)	rraA	4105247..4105732 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
ACODQS_RS20100 (ACODQS_20100)	menA	4105825..4106751 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
ACODQS_RS20105 (ACODQS_20105)	hslU	4106818..4108149 (-)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
ACODQS_RS20110 (ACODQS_20110)	hslV	4108159..4108689 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
ACODQS_RS20115 (ACODQS_20115)	ftsN	4108782..4109741 (-)	960	WP_000068828.1	cell division protein FtsN	-
ACODQS_RS20120 (ACODQS_20120)	cytR	4109833..4110858 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
ACODQS_RS20125 (ACODQS_20125)	priA	4111014..4113212 (-)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
ACODQS_RS20130 (ACODQS_20130)	rpmE	4113415..4113627 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
ACODQS_RS20135 (ACODQS_20135)	yiiX	4113688..4114296 (-)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
ACODQS_RS20140 (ACODQS_20140)	metJ	4114480..4114797 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=989189 ACODQS_RS20120 WP_000644904.1 4109833..4110858(-) (cytR) [Escherichia coli strain LTE0]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=989189 ACODQS_RS20120 WP_000644904.1 4109833..4110858(-) (cytR) [Escherichia coli strain LTE0]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628