Detailed information NTG0989158

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACODQS_RS14075
• Genome accession: NZ_CP184743
• Coordinates: 2852960..2853952 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli strain LTE0
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2847960..2858952

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACODQS_RS14055 (ACODQS_14055)	otnK	2848736..2849902 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
ACODQS_RS14060 (ACODQS_14060)	ygbL	2849994..2850632 (+)	639	WP_001278994.1	aldolase	-
ACODQS_RS14065 (ACODQS_14065)	ygbM	2850637..2851413 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ACODQS_RS14070 (ACODQS_14070)	ygbN	2851502..2852866 (+)	1365	WP_000104441.1	GntP family transporter	-
ACODQS_RS14075 (ACODQS_14075)	rpoS	2852960..2853952 (-)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
ACODQS_RS14080 (ACODQS_14080)	nlpD	2854015..2855109 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ACODQS_RS14085 (ACODQS_14085)	pcm	2855294..2855920 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACODQS_RS14090 (ACODQS_14090)	surE	2855914..2856675 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACODQS_RS14095 (ACODQS_14095)	truD	2856656..2857705 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACODQS_RS14100 (ACODQS_14100)	ispF	2857702..2858181 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACODQS_RS14105 (ACODQS_14105)	ispD	2858181..2858891 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=989158 ACODQS_RS14075 WP_000081588.1 2852960..2853952(-) (rpoS) [Escherichia coli strain LTE0]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=989158 ACODQS_RS14075 WP_000081588.1 2852960..2853952(-) (rpoS) [Escherichia coli strain LTE0]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715