Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   ACNR93_RS04540 Genome accession   NZ_CP184736
Coordinates   901683..902753 (+) Length   356 a.a.
NCBI ID   WP_420544037.1    Uniprot ID   -
Organism   Streptococcus equinus strain NM-2-29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 896683..907753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNR93_RS04525 (ACNR93_04525) - 898155..898853 (+) 699 WP_039696922.1 GntR family transcriptional regulator -
  ACNR93_RS04530 (ACNR93_04530) - 899154..899486 (+) 333 WP_004231629.1 putative DNA-binding protein -
  ACNR93_RS04535 (ACNR93_04535) ffh 899532..901097 (+) 1566 WP_033152598.1 signal recognition particle protein -
  ACNR93_RS04540 (ACNR93_04540) xerS 901683..902753 (+) 1071 WP_420544037.1 tyrosine recombinase XerS Machinery gene
  ACNR93_RS04545 (ACNR93_04545) - 902928..903872 (-) 945 WP_420544038.1 sensor histidine kinase -
  ACNR93_RS04550 (ACNR93_04550) braR 903869..904531 (-) 663 WP_024344090.1 DNA-binding response regulator Regulator
  ACNR93_RS04555 (ACNR93_04555) - 904632..906617 (-) 1986 WP_420544039.1 FtsX-like permease family protein -
  ACNR93_RS04560 (ACNR93_04560) - 906619..907371 (-) 753 WP_420544040.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41330.60 Da        Isoelectric Point: 9.7671

>NTDB_id=988896 ACNR93_RS04540 WP_420544037.1 901683..902753(+) (xerS) [Streptococcus equinus strain NM-2-29]
MKREKLLEKIDELKEIMPWYVLDYYQSKLSVPYSFTTLYEYLKEYRRFFEWILESGISNAKKIADVELTTLEHLSKKDME
SFVLYLRERPSLNTYSTKKGVSQTTINRTLSALSSLFKYLTEEVEDENGDPYFYRNVMKKIATKKKKETLAARAENIKGK
LFLGDETMAFIEYIDKEYQNKLSHRALSSFQKNKERDLAIIALLLASGVRLSEAVNLDLKDLNLNMMVIEVTRKGGKRDS
VNVAAFAKPYLEEYLKIRAPRYKAEKQDQALFLTEYRGVPNRIDASSIEKLVAKYSQDFKVRVTPHKLRHTLATRLYGAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=988896 ACNR93_RS04540 WP_420544037.1 901683..902753(+) (xerS) [Streptococcus equinus strain NM-2-29]
ATGAAACGTGAAAAATTACTTGAAAAAATTGATGAATTAAAAGAAATAATGCCCTGGTATGTCCTTGACTATTACCAATC
AAAACTTTCTGTGCCATATAGTTTTACAACCTTGTACGAATATCTTAAGGAATACAGACGATTTTTTGAATGGATTCTTG
AATCAGGAATTTCAAATGCTAAAAAAATTGCTGACGTTGAGTTAACAACTTTAGAGCATTTGTCTAAAAAAGATATGGAA
TCCTTCGTTCTCTATTTGCGTGAACGACCTTCGCTAAATACCTATTCAACTAAGAAAGGGGTTTCTCAGACCACTATCAA
TCGCACGTTATCAGCGCTTTCAAGCCTTTTTAAATATCTAACAGAAGAGGTCGAGGATGAAAATGGTGACCCCTACTTCT
ATCGAAATGTCATGAAAAAGATTGCAACTAAGAAGAAGAAGGAAACTTTAGCTGCTCGTGCTGAAAACATCAAAGGAAAG
CTATTCTTGGGAGATGAGACGATGGCGTTTATCGAGTATATTGACAAAGAATATCAGAATAAGCTCTCTCACCGTGCCCT
CTCCTCCTTCCAGAAAAATAAGGAGCGAGATTTAGCTATTATTGCACTTCTTCTTGCTTCAGGTGTCCGTCTTTCTGAAG
CAGTTAATCTTGATTTAAAAGATTTAAACCTCAATATGATGGTTATTGAAGTCACTCGTAAAGGTGGAAAACGAGACTCT
GTTAACGTTGCTGCTTTTGCTAAACCATATCTCGAAGAATACTTAAAAATTCGTGCACCTCGTTATAAAGCAGAAAAACA
AGATCAAGCACTATTTTTAACAGAATACCGTGGTGTTCCAAATCGTATTGATGCATCAAGTATTGAAAAATTAGTAGCTA
AATACTCACAAGACTTTAAAGTTCGAGTGACACCCCACAAGCTACGTCACACTTTGGCAACAAGATTGTATGGGGCTACT
AAATCACAAGTACTCGTCAGCCACCAATTGGGACATGCAAGTACTCAAGTTACCGACTTATATACCCATATTGTCAATGA
TGAGCAGAAAAACGCTTTGGATAAATTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.427

100

0.834