Detailed information NTG0988761

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: AAGT77_RS03595
• Genome accession: NZ_CP152380
• Coordinates: 783143..784528 (-)
• Length: 461 a.a.
• NCBI ID: WP_342631863.1
• Uniprot ID: -
• Organism: Marinobacter alkaliphilus strain SBY-1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 778143..789528

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAGT77_RS03580 (AAGT77_03580)	-	778326..782027 (+)	3702	WP_342631861.1	PilC/PilY family type IV pilus protein	-
AAGT77_RS03585 (AAGT77_03585)	-	782041..782514 (+)	474	WP_058091304.1	type IV pilin protein	-
AAGT77_RS20870	-	782525..783046 (-)	522	WP_404810687.1	GspH/FimT family pseudopilin	-
AAGT77_RS03590 (AAGT77_03590)	-	782966..783136 (+)	171	WP_342631862.1	hypothetical protein	-
AAGT77_RS03595 (AAGT77_03595)	pilR	783143..784528 (-)	1386	WP_342631863.1	sigma-54 dependent transcriptional regulator	Regulator
AAGT77_RS03600 (AAGT77_03600)	-	784583..786229 (-)	1647	WP_342631864.1	ATP-binding protein	-
AAGT77_RS03605 (AAGT77_03605)	-	786323..787987 (+)	1665	WP_342631865.1	NAD+ synthase	-
AAGT77_RS03610 (AAGT77_03610)	-	788054..788887 (-)	834	WP_342631866.1	outer membrane protein assembly factor BamD	-

Sequence

Protein

• Length: 461 a.a.
• Molecular weight: 50707.92 Da
• Isoelectric Point: 4.9013

>NTDB_id=988761 AAGT77_RS03595 WP_342631863.1 783143..784528(-) (pilR) [Marinobacter alkaliphilus strain SBY-1]
MTHQTALIVDDEPDIRDLLEITLTRMGITTYTAPDLTTARALLEQHKPQLCLTDMNLPDGNGIDLVHWIQQHTPCTPVAV
ITAYGNMDTAIESLKAGAFDFVSKPVELPRLRELVNSALKLSEPKIQDSAEADEPGLLLGESPQIRKLRNQTRKLARSQA
PVFISGESGSGKELVARMIHMQGPRADGPFIAVNCGAIPSELMESEFFGHKKGSFTGAVENKEGLFRSANGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRPVGDTKEVPVDIRVLSATHKNLPELVQEGSFRQDLFYRINVIELAVPPLRERAEDISLLA
DHILQRIAREYECAPAKLTPGAIERLQGYDFPGNVRELENILERAFTLCDEDFIDAADLHLGGGAIPGTPVSERSSDTGT
SEAPAPVPEGEIDLEGFLENIERQAIEKALEATRWNKTAAAKRLGISFRALRYRLKKLGME

Nucleotide

• Length: 1386 bp

>NTDB_id=988761 AAGT77_RS03595 WP_342631863.1 783143..784528(-) (pilR) [Marinobacter alkaliphilus strain SBY-1]
ATGACACACCAAACAGCGCTGATTGTTGACGACGAACCGGATATCCGGGACTTGCTGGAAATCACCCTCACCCGCATGGG
GATTACCACCTACACCGCACCGGACCTGACCACAGCCCGGGCCTTGCTTGAACAGCATAAACCCCAGCTGTGCCTGACCG
ACATGAACCTGCCGGACGGCAACGGTATAGACCTCGTGCATTGGATTCAGCAGCACACGCCCTGCACGCCGGTAGCCGTG
ATCACCGCTTACGGCAACATGGACACGGCTATCGAATCCCTGAAAGCGGGCGCTTTCGACTTTGTCTCCAAACCGGTGGA
GCTGCCCCGCCTGCGAGAACTGGTGAACAGCGCCCTCAAGCTGAGCGAACCCAAAATTCAGGATAGCGCCGAAGCTGATG
AGCCAGGACTTCTGCTCGGTGAATCCCCACAAATCCGCAAGCTGCGGAACCAGACCCGAAAGCTGGCCCGAAGCCAGGCG
CCGGTGTTTATCAGCGGCGAATCCGGCAGTGGAAAAGAGCTGGTCGCCCGCATGATCCACATGCAGGGCCCAAGGGCCGA
TGGCCCCTTTATCGCCGTTAACTGCGGCGCCATCCCTTCGGAACTGATGGAAAGCGAGTTCTTTGGCCACAAGAAAGGCA
GCTTTACCGGTGCGGTCGAAAACAAGGAGGGCCTGTTCCGAAGCGCCAACGGCGGCACCCTGTTCCTGGACGAAGTCGCC
GACCTGCCCCTGGCCATGCAGGTAAAGCTGCTGCGCGCCATTCAGGAAAAAGCCGTGCGGCCGGTGGGCGACACCAAGGA
AGTGCCAGTAGATATCCGCGTACTCAGCGCCACCCACAAAAACCTGCCGGAACTGGTGCAAGAAGGCAGCTTCCGTCAGG
ACCTGTTCTACCGCATTAACGTGATTGAACTGGCGGTACCGCCTCTGCGCGAGCGGGCGGAAGACATTTCCCTGCTGGCG
GACCATATTCTGCAGCGCATCGCCCGAGAGTACGAATGCGCCCCCGCCAAACTAACGCCGGGGGCTATCGAACGCCTGCA
GGGATACGATTTCCCAGGCAACGTGCGTGAGCTGGAGAACATTCTGGAGCGGGCGTTTACGCTGTGTGATGAAGATTTTA
TTGATGCGGCTGATTTGCATCTGGGCGGTGGTGCTATCCCCGGAACCCCGGTATCGGAGCGCAGCTCTGACACTGGCACA
TCAGAGGCTCCTGCTCCTGTACCCGAGGGGGAGATAGACCTGGAAGGCTTCCTGGAGAACATCGAGCGGCAGGCGATTGA
GAAGGCGCTAGAGGCAACCCGGTGGAACAAGACGGCGGCGGCCAAGAGGCTGGGGATCAGTTTTCGGGCGTTGAGGTATC
GGTTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-115)

• Sigma-54 interaction domain (Sigma54_activat) (138-304)

• Bacterial regulatory protein, Fis family (HTH_8) (417-458)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.991	100	0.64
pilR	Acinetobacter baumannii strain A118	53.896	100	0.54